Publications by Raul San Jose Estepar


More info

2009 2008 2007 2006 2005 2004 2003 2001 2000

2009

Matsuoka S, Washko GR, Yamashiro T, San Jose Estepar R, Diaz A, Silverman EK, Hoffman E, Fessler HE, Criner GJ, Marchetti N, Scharf SM, Martinez FJ, Reilly JJ, Hatabu H. Pulmonary hypertension and CT measurement of small pulmonary vessels in severe emphysema. American Journal of Respiratory and Critical Care Medicine 2009;In press.

Matsuoka S, Washko GR, Dransfield MT, Yamashiro T, San Jose Estepar R, Diaz A, Silverman EK, Patz S, Hatabu H. Quantitative CT measurement of cross-sectional area of small pulmonary vessel in COPD: Correlations with emphysema and airflow limitation. Academic Radiology 2009;in press.

Washko GR, Lynch DA, Matsuoka S, Ross JC, Umeoka S, Diaz A, Sciurba FC, Hunninghake GM, San Jose Estepar R, Silverman EK, Rosas IO, Hatabu H. Identification of early interstitial lung disease in smokers from the COPDgene study. Academic Radiology 2009;in press.

Ross JC, San Jose Estepar R, D\'{\i}az A, Westin CF, Kikinis R, Silverman EK, Washko GR. Lung extraction, lobe segmentation and hierarchical region assessment for quantitative analysis on high resolution computed tomography images. In GZ Yang, D Hawkes, D Rueckert, A Noble, C Taylor, eds., Medical Image Computing and Computer-Assisted Intervention - MICCAI 2009, volume 5762 of Lecture Notes in Computer Science. London, UK: Springer, 2009;690-698.

Shams R, San Jose Estepar R, Patil V, Vosburgh KG. Intraoperative ultrasound probe calibration in a sterile environment. In Medical Image Computing and Computer-Assisted Intervention (MICCAI) 5th workshop on Augmented Environments for Medical Imaging and Computer-aided Surgery (AMI-ARCS). London, UK, 2009;53-60.

Yamashiro T, Matsuoka S, San Jose Estepar R, Diaz A, Newell J, Sandhaus RA, Mergo P, Brantly ML, Murayama S, Reilly JJ, Hatabu H, Silverman EK, Washko GR. Quantitative airway assessment on computed tomography in patients with alpha1-antitrypsin deficiency. Journal of COPD 2009;6(6):in press.

Kindlmann G, San Jose Estepar R, Smith SM, Westin CF. Sampling and visualizing creases with scale-space particles. IEEE Transactions on Visualization and Computer Graphics 2009;15(6):1415-1424.

Judy P, San Jose Estepar R, Hoffman E, Lynch D, (for the COPDGene investigators). Copdgene study quality assurance phantom. Medical Physics 2009;36(6):2435-2435.

San Jose Estepar R, Madore B, Yarmarkovich M, Vosburgh KG. A MRI study of relative organ position in the upper abdomen for changes in patient orientation: application to image-registered endoscopic ultrasound. International Journal of Computer Assisted Radiology and Surgery 2009;4(Supplement 1):S257-S259.

Patil V, San Jose Estepar R, Walsh CJ, Vosburgh KG. Dynamic ct scanner environment effects on a dc electromagnetic tracking system. International Journal of Computer Assisted Radiology and Surgery 2009;4(Supplement 1):S339-S340.

San Jose Estepar R, Westin CF, Vosburgh K. Towards real time 2d to 3d registration for ultrasound-guided endoscopic and laparoscopic procedures. International Journal of Computer Assisted Radiology and Surgery 2009;4(6):549-560.

Washko GR, Dransfield MT, San Jose Estepar R, Diaz A, Matsuoka S, Yamashiro T, Hatabu H, Silverman EK, Bailey WC, Reilly JJ. Airway wall attenuation: A biomarker of airway disease in subjects with copd. Journal of Applied Physiology 2009;107:185-191.

Kim WJ, Silverman EK, Hoffman E, Criner GJ, Mosenifar Z, Sciurba FC, Make BJ, Carey V, San Jose Estepar R, Diaz A, Reilly JJ, Martinez FJ, Washko GR. Ct metrics of airway disease and emphysema in severe copd. Chest 2009;.

Fitzsimmons J, Kubicki M, Smith K, Bushell G, San Jose Estepar R, Westin CF, Nestor P, Niznikiewicz M, Kikinis R, McCarley R, Shenton M. Diffusion tractography of the fornix in schizophrenia. Schizophrenia Research 2009;107(1):39-46.

2008

San Jose Estepar R, Reilly JJ, Silverman EK, Washko GR. Three-dimensional airway measurements and algorithms. Proceedings of the American Thoracic Society 2008;5(9):905-909.

San Jose Estepar R, Westin CF, Vosburgh KG. Real time 2d to 3d registration for ultrasound-guided endoscopic procedures. International Journal of Computer Assisted Radiology and Surgery 2008;3(Supplement 1):S108-S109.

San Jose Estepar R, Washko GG, Silverman EK, Reilly JJ, Kikinis R, Westin CF. Airway inspector: An open source application for lung morphometry. In First International Workshop on Pulmonary Image Processing. New York City, USA, 2008;293-302. Available on-line: www.lulu.com/content/3507981.

Vosburgh KG, Stoll J, Noble V, Pohl K, San Jose Estepar R, Takacs B. Image registration assists novice operators in ultrasound assessment of abdominal trauma. Studies in Health Technology and Informatics 2008;132:532-537.

2007

Jolley M, Stinstra J, Weinstein D, Pieper S, Estepar RSJ, Kindlmann G, MacLeod R, Brooks DH, Triedman JK. Open-source environment for interactive finite element modeling of optimal icd electrode placement. In Functional Imaging and Modeling of the Heart, volume 4466 of Lecture Notes in Computer Science. Springer, 2007;373-382.

San Jose Estepar R. Local Structure Tensor for Multidimensional Signal Processing. Applications to Medical Image Analysis. Louvain-la-Neuve,Belgium: Presses universitaires de Louvain, 2007. ISBN: 978-2-87463-101-6.

San Jose Estepar R, Stylopoulos N, Ellis R, Samset E, Westin CF, Thompson C, Vosburgh K. Towards scarless surgery: An endoscopic ultrasound navigation system for transgastric access procedures. Computer Aided Surgery 2007;12(6):311-324.

Dransfield MT, Washko GR, Foreman MG, Estepar RSJ, Reilly J, Bailey WC. Gender differences in the severity of ct emphysema in copd. Chest 2007;132:464-470.

Kindlmann G, Estepar RSJ, Niethammer M, Haker S, Westin CF. Geodesic-loxodromes for diffusion tensor interpolation and difference measurement. In Tenth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'07), Lecture Notes in Computer Science 4791. Brisbane, Australia, 2007;1-9.

Vosburgh KG, San Jose Estepar R. Natural orifice transluminal endoscopic surgery (notes): An opportunity for augmented reality guidance. Studies in Health Technology and Informatics 2007;125:485-490.

Vosburgh KG, Stylopoulos N, San Jose Estepar R, Ellis RE, Samset E, Thompson CC. EUS with CT improves efficiency and structure identification over conventional EUS. Gastrointestinal Endoscopy 2007;65(6):866-870.

Hersh CP, Washko GR, Jacobson FL, Gill R, San Jose Estepar R, Reilly JJ, Silverman EK. Interobserver variability in the determination of upper lobe-predominant emphysema. Chest 2007;131:424-431.

2006

Mulkern R, Davis P, Haker S, San Jose Estepar R, Panych L, Maier S, Rivkin M. Complementary aspects of diffusion imaging and fmri; i: structure and function. Magnetic Resonance Imaging 2006;24(4):463-474.

San Jose Estepar R, Washko GG, Silverman EK, Reilly JJ, Kikinis R, Westin CF. Accurate airway wall estimation using phase congruency. In Ninth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'06), Lecture Notes in Computer Science 4191. Copenhagen, Denmark, 2006;125-134.

San Jose Estepar R, Stylopoulos N, Ellis RE, Samset E, Westin CF, Thompson C, Vosburgh K. Towards scarless surgery: An endoscopic-ultrasound navigation system for transgastric access procedures. In Ninth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'06), Lecture Notes in Computer Science 4190. Copenhagen, Denmark, 2006;445-453.

Vosburgh KG, Stylopoulos N, Thompson CC, Ellis RE, Samset E, San Jose Estepar R. Novel real time tracking interface improves the use of laparoscopic and endoscopic ultrasound in the abdomen. International Journal of Computer Assisted Radiology and Surgery 2006;1:282-284.

Niethammer M, San Jose Estepar R, Bouix S, Shenton M, Westin CF. On diffusion tensor estimation. In 28th IEEE EMBS. New York City, NY, USA, 2006;2622-2625.

San Jose Estepar R, Kubicki M, Shenton M, Westin CF. A kernel-based approach for user-guided fiber bundling using diffusion tensor data. In 28th IEEE EMBS. New York City, NY, USA, 2006;2626-2629.

Aja-Fernandez S, San Jose Estepar R, Alberola Lopez C, Westin CF. Image quality assessment based on local variance. In 28th IEEE EMBS. New York City, NY, USA, 2006;4815-4818.

2005

San Jose Estepar R, Haker S, Westin CF. Riemannian mean curvature flow. In Lecture Notes in Computer Science: ISVC05, volume 3804 of Lecture Notes in Computer Science. 2005;613-620.

de Luis Garcia R, San Jose Estepar R, Alberola-Lopez C. Pull-push level sets: a new term to encode prior knowledge for the segmentation of teeth images. In Medical Imaging 2005: Image Processing, volume 5747 of Proceedings of SPIE. 2005;598-605.

San Jose Estepar R. Local Structure Tensor for Multidimensional Signal Processing. Applications to Medical Image Analysis. Ph.D. thesis, University of Valladolid, Spain, 2005.

2004

San Jose Estepar R, Brun A, Westin CF. Robust generalized total least squares iterative closest point registration. In Seventh International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'04), Lecture Notes in Computer Science. Rennes - Saint Malo, France, 2004;234-241.

Kubicki M, Maier SE, Westin CF, Mamata H, Ersner-Hershfield H, San Jose Estepar R, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Comparison of single-shot echo-planar and line scan protocols for diffusion tensor imaging. Academic Radiology 2004;11(2):224-232.

Levitt JJ, Westin CF, Nestor PG, San Jose Estepar R, Dickey CC, Voglmaier MM, Seidman LJ, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Shape of the caudate nucleus and its cognitive correlates in neuroleptic-naive schizotypal personality disorder. Biological Psychiatry 2004;55:177-184.

2003

San Jose Estepar R, Martin-Fernandez M, Caballero-Martinez P, Alberola-Lopez C, Ruiz-Alzola J. A theoretical framework to three-dimensional ultrasound reconstruction from irregularly-sample data. Ultrasound in Medicine and Biology 2003;29(2):255-269.

San Jose Estepar R, Martin-Fernandez M, Alberola-Lopez C, Ellsmere J, Kikinis R, Westin CF. Freehand ultrasound reconstruction based on roi prior modeling and normalized convolution. In RE Ellis, TM Peters, eds., Sixth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'03), Lecture Notes in Computer Science 2879. Montreal, Canada: Springer Verlag, 2003;382-390.

Sigfridsson A, San Jose Estepar R, Wigstrom L, Alberola-Lopez C, Westin CF. Diffusion tensor visualization using random field correlation and volume rendering. In RM Diaz, AQ Arencibia, eds., Proc. of th 9th International Workshop on Computer Aided Systems Theory. Las Palmas de Gran Canaria, Spain: Universidad de Las Palmas de Gran Canaria, 2003;41-45.

San Jose Estepar R, Alberola-Lopez C, Ruiz-Alzola J, Kikinis R, Westin CF. Shape alignment based on phase spectrum and ica. In RM Diaz, AQ Arencibia, eds., Computer Aided Systems Theory (EUROCAST'03). Las Palmas de Gran Canaria, Spain: Universidad de Las Palmas de Gran Canaria, 2003;63-66.

Martin-Fernandez M, San Jose Estepar R, Westin CF, Alberola-Lopez C. A novel gauss-markov random field approach for regularization of diffusion tensor maps. In R Moreno-Diaz, F Pichler, eds., Ninth International Conference on Computer Aided Systems Theory (EUROCAST'03), Lecture Notes in Computer Science 2809. Las Palmas de Gran Canaria, Spain: Springer Verlag, 2003;506-517.

Martin-Fernandez M, San Jose Estepar R, Westin CF, Alberola-Lopez C. A novel gauss-markov random field approach for regularization of diffusion tensor maps. In Abstracts of the Ninth International Conference on Computer Aided Systems Theory (EUROCAST'03). Las Palmas de Gran Canaria, Spain, 2003;29-32.

2001

San Jose Estepar R, Alberola-Lopez C, Ruiz J. Reshaping polygonal meshes with smoothed normals extracted from ultrasound volume data : an optimization approach. In MFI K Kirk Shung, ed., Medical Imaging 2001: Ultrasonic Imaging and Signal Processing, volume 4325 of Proceedings of SPIE. San Diego, USA: SPIE Press, 2001;462-472.

Martin-Fernandez M, San Jose Estepar R, Alberola-Lopez C. Maximum likelihood contour estimation using beta-statistics in ultrasound images. In Proceedings of the IEEE-EURASIP Image and Signal Processing and Analysis (ISPA'01). Pula, Croatia, 2001;207-212.

2000

San Jose Estepar R, Rivera A, Pinacho M, Alberola-Lopez C, Ruiz J. Kalman filter technique applied to surface reconstruction and visualization from noisy volume data. In MFI K Kirk Shung, ed., Medical Imaging 2000: Ultrasonic Imaging and Signal ProcessingFourth International Conference on Medical Image Computing and, volume 3982 of Proceedings of SPIE. San Diego, USA: SPIE Press, 2000;396-407.