2008

Qazi AA, Radmanesh A, O'Donnell L, Kindlmann G, Peled S, Whalen S, Westin CF, Golby AJ. Resolving crossings in the corticospinal tract by two-tensor streamline tractography: method and clinical assessment using fMRI. Neuroimage 2008;.

San Jose Estepar R, Vosburgh CFWKG. Real time 2d to 3d registration for ultrasound-guided endoscopic procedures. International Journal of Computer Assisted Radiology and Surgery 2008;3(Supplement 1):S108-S109.

Khan U, Kubicki M, Westin CF, Pieper S, McCarley R, Shenton M. Atlas-based segmentation of DTI in schizophrenia 2008;.

Rosenberger G, Kubicki M, Nestor PG, Connor E, Bushell G, Markant D, Niznikiewicz M, Westin CF, Kikinis R, Saykin A, McCarley R, Shenton ME. Age-related deficits in fronto-temporal connections in schizophrenia: A diffusion tensor imaging study. Schizophr Res 2008;102(1-3):181-188.

Aja-Fernandez S, Niethammer M, Kubicki M, Shenton ME, Westin CF. Restoration of DWI data using a rician LMMSE estimator. IEEE Trans Med Imaging 2008;27:1389-1403.

Vosburgh KG, Stoll J, Noble V, Pohl K, San Jose Estepar R, Takacs B. Image registration assists novice operators in ultrasound assessment of abdominal trauma. Studies in Health Technology and Informatics 2008;132:532-537.

2007

Kindlmann G, Tricoche X, Westin CF. Delineating white matter structure in diffusion tensor MRI with anisotropy creases. Medical Image Analysis 2007;11(5):492-502.

Kindlmann G, Ennis DB, Whitaker RT, Westin CF. Diffusion tensor analysis with invariant gradients and rotation tangents. IEEE Transactions on Medical Imaging 2007;26(11):1483-1499.

Krissian K, Westin CF, Kikinis R, Vosburgh K. Oriented speckle reducing anisotropic diffusion. IEEE Trans Image Process 2007 2007;1412-1424.

Peled S. New perspectives on the sources of white matter dti signal. IEEE Transactions on Medical Imaging 2007;26(11):1448-1455.

O'Donnell LJ, Westin CF. Automatic tractography segmentation using a high-dimensional white matter atlas. IEEE Transactions on Medical Imaging 2007;26(11):1562-1575.

Dransfield MT, Washko GR, Foreman MG, Estepar RSJ, Reilly J, Bailey WC. Gender differences in the severity of ct emphysema in copd. Chest 2007;132:464-470.

Kubicki M, McCarley R, Westin CF, Park HJ, Maier S, Kikinis R, Jolesz FA, Shenton ME. A review of diffusion tensor imaging studies in schizophrenia. Journal of Psychiatric Research 2007;41:15-30.

Pujol S, Frerichs K, Norbash A, Kikinis R, Westin CF. Preliminary results of nonfluoroscopy-based 3d navigation for neurointerventional procedures. J Vasc Interv Radiol 2007;18:289-298.

Gurrera RJ, Nakamura M, Kubicki M, Dickey CC, Niznikiewicz MA, Voglmaier MM, McCarley RW, Shenton ME, Westin CF, Maier SE, Seidman LJ. The uncinate fasciculus and extraversion in schizotypal personality disorder: a diffusion tensor imaging study. Schizophrenia Research 2007;90:360-362.

Vosburgh KG, San Jose Estepar R. Natural orifice transluminal endoscopic surgery (notes): An opportunity for augmented reality guidance. Studies in Health Technology and Informatics 2007;125:485-490.

Vosburgh KG, Stylopoulos N, San Jose Estepar R, Ellis RE, Samset E, Thompson CC. EUS with CT improves efficiency and structure identification over conventional EUS. Gastrointestinal Endoscopy 2007;65(6):866-870.

Hersh CP, Washko GR, Jacobson FL, Gill R, San Jose Estepar R, Reilly JJ, Silverman EK. Interobserver variability in the determination of upper lobe-predominant emphysema. Chest 2007;131:424-431.

Bouix S, Martin-Fernandez M, Ungar L, Koo MNMS, McCarley RW, Shenton ME. On evaluating brain tissue classifiers without a ground truth. NeuroImage 2007;36:1207-1224.

Martin-Fernandez M, Alberola-Lopez C, Ruiz-Alzola J, Westin CF. Sequential anisotropic wiener filtering applied to 3D MRI data. Magnetic Resonance Imaging 2007;25:278-292.

Dauguet J, Peled S, Berezovskii V, Delzescaux T, Warfield SK, Born R, Westin CF. Comparison of fiber tracts derived from in-vivo dti tractography with 3d histological neural tract tracer reconstruction on a macaque brain. NeuroImage 2007;37:530-538.

Nakamura M, Salisbury DF, Hirayasu Y, Bouix S, Pohl KM, Yoshida T, Koo M, Shenton ME, McCarley RW. Neocortical gray matter volume in first episode schizophrenia and first episode affective psychosis: A cross-sectional and longitudinal mri study. Biological Psychiatry 2007;.

Pohl KM, Bouix S, Nakamura M, Rohlfing T, McCarley RW, Kikinis R, Grimson WEL, Shenton, Wells WM. A hierarchical algorithm for mr brain image parcellation. IEEE Transa on Medical Imaging 2007;.

Pohl KM, Bouix S, Shenton ME, McCarley RW, Grimson WEL, Kikinis R, M W. Using the logarithm of odds to define a vector space on probablistic atlases. Medical Image Analysis Press 2007;.

Andersson K, Westin CF, Knutsson H. Prediction from off-grid samples using continuous normalized convolution. Signal Processing 2007;87(3):353-356.

Siddiqi K, Zhang J, Macrini D, Shokoufandeh A, Bouix S, Chen R, Dickinson S. Retrieving articulated 3-d models using medial surfaces. Machine Vision and Applications 2007;.

2006

Haidar H, Bouix S, Levitt JJ, McCarley RW, Shenton ME, Soul JS. Characterizing the shape of anatomical structures with poisson's equation. IEEE Transactions on Medical Imaging 2006;25(10):1249-1257.

Koo M, Dickey CC, Park H, Kubicki M, Ji NY, Bouix S, Pohl KM, J J Levitt MES M Nakamura, McCarley RW. Smaller neocortical gray matter and larger sulcal csf volumes in neuroleptic-naive females with schizotypal personality disorder. Archives of General Psychiatry 2006;63:1090-1100.

Peled S, Friman O, Jolesz F, Westin CF. Geometrically constrained two-tensor model for crossing tracts in DWI. Magnetic Resonance Imaging 2006;24:1263-1270.

Kindlmann G, Westin CF. Diffusion tensor visualization with glyph packing. IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2006) 2006;12(5):1329-1335.

Mulkern R, Davis P, Haker S, San Jose Estepar R, Panych L, Maier S, Rivkin M. Complementary aspects of diffusion imaging and fmri; i: structure and function. Magnetic Resonance Imaging 2006;24(4):463-474.

Vosburgh KG, Stylopoulos N, Thompson CC, Ellis RE, Samset E, San Jose Estepar R. Novel real time tracking interface improves the use of laparoscopic and endoscopic ultrasound in the abdomen. International Journal of Computer Assisted Radiology and Surgery 2006;1:282-284.

Farneback G, Westin CF. Improving Deriche-style recursive gaussian filters. Journal of Mathematics in Imaging and Vision 2006;26(3).

Friman O, Farneback G, Westin CF. A Bayesian approach for stochastic white matter tractography. TMI 2006;25(8):965-978.

Madore B, Farneback G, Westin CF, Mendicuti MAD. A new strategy for respiration compensation, applied toward 3D free-breathing cardiac MR imaging. MRI 2006;24(6):727-737.

O'Donnell L, M K, Shenton ME, Dreusicke M, Grimson WEL, Westin CF. A method for clustering white matter fiber tracts. AJNR 2006;27(5).

Kuroki N, Kubicki M, Salisbury PGNDF, Park HJ, Levitt JJ, Woolston S, Frumin M, Niznikiewicz M, Westin CF, Maier SE, McCarley R, Shenton ME. Fornix integrity and hippocampal volume in male schizophrenic patients. Biol Psychiatry 2006;60:22-31.

Casaseca JP, Martin-Fernandez M, Alberola-Lopez C. Weaning from mechanical ventilation: a multimodal signal analysis. IEEE Transactions on Biomedical Engineering 2006;53(7):1330-1345.

2005

Bouix S, Siddiqi K. Optics, mechanics, and hamilton-jacobi skeletons. Advances in Imaging and Electron Physics 2005;135:1-39.

Kubicki M, Westin CF, McCarley R, Shenton ME. The application of dti to investigate white matter abnormalities in schizophrenia. Ann NY Acad Sci 2005;1064:134-148.

Simmross-Wattenberg F, Carranza-Herrezuelo N, Palacios-Camarero C, de la Higuera JPC, Martin-Fernandez MA, Aja-Fernandez S, Ruiz-Alzola J, Westin CF, Alberola-Lopez C. Group-slicer: a collaborative extension of the 3D-slicer. Journal of Biomedical Informatics 2005;38(6).

Friman O, Westin CF. Resampling fMRI time series. NeuroImage 2005;25(3):859-867.

Kubicki M, Park HJ, Westin CF, Nestor P, Mulkern R, Maier SE, Niznikiewicz M, Connor E, Levitt J, Frumin M, Kikinis R, Jolesz FA, McCarley R, Shenton ME. DTI and MTR abnormalities in schizophrenia: Analysis of white matter integrity. Neuroimage 2005;26:1109-1118.

Nakamura M, McCarley RW, Kubicki M, Dickey CC, Niznikiewicz MA, Voglmaier MM, Seidman LJ, Maier SE, Westin CF, Kikinis R, Shenton ME. Fronto-temporal disconnectivity in schizotypal personality disorder: A diffusion tensor imaging study. Biological Psychiatry 2005;58(6):468-478.

Martin-Fernandez M, Alberola-Lopez C. On low order moments for the homodyned k distribution. Ultrasonics 2005;43:283-290.

Martin-Fernandez M, Alberola-Lopez C. An approach for contour detection of human kidneys from ultrasound images using markov random fields and active contours. Medical Image Analysis 2005;9(1):1-23.

Krissian K, Westin CF. Fast sub-voxel re-initialization of the distance map for level set methods. Pattern Recognition Letters 2005;26(10):1532-1542.

Verhey J, , Wisser J, Keller T, Westin CF, Kikinis R. Rigid overlay of volume sonography and MR image data. Computerized Medical Imaging and Graphics 2005;29:243-249.

Yoo SS, Park HJ, Soul JS, Mamata H, Westin CF, Bassan H, Du Plessis AJ, Robertson RL, Ringer SA, Maier SE, Volpe JJ, Zientara GP. In vivo visualization of white matter fiber tracts of preterm- and term- infant brain with diffusion tensor MRI. Investigative Radiology 2005;40(2):110-115.

Warfield SK, Haker SJ, Talos IF, Kemper CA, Weisenfeld N, Mewes A, Goldberg-Zimring D, Zou KH, Westin CF, Wells WM, Tempany CMC, Golby A, Black PM, Jolesz FA, Kikinis R. Capturing intraoperative deformations: Research experience at the surgical planning laboratory. Medical Image Analysis 2005;9:145-162.

Hoge WS, Westin CF. Identification of translational displacements between N-dimensional data sets using the high order SVD and phase correlation. IEEE Transactions on Image Processing 2005;14(7):884-889.

Ruiz-Alzola J, Alberola-Lopez C, Westin CF. Kriging filters for multidimensional signal processing. Signal Processing 2005;85(2):413-439.

Wiegand LC, Warfield SK, Levitt JJ, Hirayasu Y, Salisbury DF, Heckers S, Bouix S, Schwartz D, Spencer M, Dickey CC, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. An in vivo mri study of prefrontal cortical complexity in first episode psychosis. American Journal of Psychiatry 2005;162:65-70.

Bouix S, Siddiqi K, Tannenbaum A. Flux driven automatic centerline extraction. Medical Image Analysis 2005;9(3):209-221.

Bouix S, Pruessner JC, Collins DL, Siddiqi K. Hippocampal shape analysis using medial surfaces. NeuroImage 2005;25(4):1077-1089.

2004

Park HJ, Westin CF, Kubicki M, Maier SE, Niznikiewicz M, Baer A, Frumin M, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. White matter hemisphere asymmetries in healthy subjects and in schizophrenia: A diffusion tensor MRI study. Neuroimage 2004;24:213-223.

Friman O, Borga M, Lundberg P, Knutsson H. Detection and detrending in functional MRI data analysis. NeuroImage 2004;22(2):645-655.

Alberola-Lopez C, Martin-Fernandez M, Ruiz-Alzola J. Comments on: A methodology for evaluation of boundary detection algorithms on medical images. IEEE Transactions on Medical Imaging 2004;23(5):658-660.

Park HJ, Kubicki M, Westin CF, Talos IF, Brun A, Pieper S, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Method for combining information from white matter fiber tracking and gray matter parcellation. American Journal of Neuroradiology 2004;25:1318-1324.

Maier SE, Vajapeyam S, Mamata H, Westin CF, Jolesz FA, Mulkern RV. Biexponential diffusion tensor analysis of human brain diffusion data. Magnetic Resonance in Medicine 2004;51:321-330.

Kubicki M, Maier SE, Westin CF, Mamata H, Ersner-Hershfield H, San Jose Estepar R, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Comparison of single-shot echo-planar and line scan protocols for diffusion tensor imaging. Academic Radiology 2004;11(2):224-232.

Levitt JJ, Westin CF, Nestor PG, San Jose Estepar R, Dickey CC, Voglmaier MM, Seidman LJ, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Shape of the caudate nucleus and its cognitive correlates in neuroleptic-naive schizotypal personality disorder. Biological Psychiatry 2004;55:177-184.

2003

Friman O, Borga M, Lundberg P, Knutsson H. Adaptive analysis of fMRI data. NeuroImage 2003;19(3):837-845.

Watanabe M, Kikinis R, Westin CF. Level set-based integration of segmentation and computational fluid dynamics for flow correction in phase contrast angiography. Academic Radiology 2003;10(12):1416-23.

Park HJ, Kubicki M, Shenton ME, Guimond A, McCarley RW, Maier SE, Kikinis R, Jolesz FA, Westin CF. Spatial normalization of diffusion tensor MRI using multiple channels. Neuroimage 2003;20(4):1995-2009.

San Jose Estepar R, Martin-Fernandez M, Caballero-Martinez P, Alberola-Lopez C, Ruiz-Alzola J. A theoretical framework to three-dimensional ultrasound reconstruction from irregularly-sample data. Ultrasound in Medicine and Biology 2003;29(2):255-269.

Kubicki M, Westin CF, Maier SE, Mamata H, Frumin M, Ernst-Hirshefeld H, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Cingulate fasciculus integrity disruption in schizophrenia: A magnetic resonance diffusion tensor imaging study. Biological Phychiatry 2003;54:1171-1180.

2002

Friman O, Borga M, Lundberg P, Knutsson H. Exploratory fMRI analysis by autocorrelation maximization. NeuroImage 2002;16(2):454-464.

Kubicki M, Westin CF, Maier SE, Mamata H, Frumin M, Ernst-Hirshefeld H, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Diffusion tensor imaging and its application to neuropsychiatric disorders. Harvard Rev of Psychiatry 2002;10:234-336.

Kubicki M, Westin CF, Maier SE, Frumin M, Nestor PG, Salisbury D, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Uncinate fasciculus findings in schizophrenia: A magnetic resonance diffusion tensor imaging study. AmJPsych 2002;159:813-820.

Mamata H, Mamata Y, Westin CF, Shenton ME, Jolesz FA, Maier SE. High-resolution line-scan diffusion-tensor MRI of white matter fiber tract anatomy. American Journal of NeuroRadiology 2002;32:67-75.

Westin CF, Maier SE, Mamata H, Nabavi A, Jolesz FA, Kikinis R. Processing and visualization of diffusion tensor MRI. Medical Image Analysis 2002;6(2):93-108.

Ruiz-Alzola J, Westin CF, Warfield SK, Alberola C, Maier SE, Kikinis R. Nonrigid registration of 3d tensor medical data. Medical Image Analysis 2002;6(2):143-161.

Krissian K. Flux-based anisotropic diffusion applied to enhancement of 3d angiograms. IEEE Transactions on Medical Imaging 2002;21(11):1440-1442.

Siddiqi K, Bouix S, Tannenbaum A, Zucker SW. Hamilton-jacobi skeletons. International Journal of Computer Vision 2002;48(3):215-231.

2001

Friman O, Carlsson J, Lundberg P, Borga M, Knutsson H. Detection of neural activity in functional MRI using canonical correlation analysis. Magnetic Resonance in Medicine 2001;45(2):323-330.

Ruiz-Alzola J, Kikinis R, Westin CF. Detection of landmarks in multidimensional tensor data. Signal Processing 2001;81:2243-2247.

Lorigo LM, Faugeras OD, Grimson WEL, Keriven R, Kikinis R, Nabavi A, Westin CF. Curves: Curve evolution for vessel segmentation. Medical Image Analysis 2001;5:195-206.

Westin CF, Wigström L, Loock T, Sjökvist L, Kikinis R, Knutsson H. Three-dimensional adaptive filtering in magnetic resonance angiography. Journal of Magnetic Resonance Imaging 2001;14:63-71.

Nabavi A, Black PML, Gering DT, Westin CF, Metha V, Pergolizzi RS, Jr, Ferrant M, Warfield SK, Hata N, Schwarts RB, Wells WM, Kikinis R, Jolesz FA. Serial intraoperative mr imaging of brain shift. Neurosurgery 2001;48:787-798.

2000

Nabavi A, RS RSPJ, Martin C, Schwartz RB, Friedlander RM, Kacher D, Westin CF, Kikinis R, III EA, Black PML, Jolesz FA, Stieg PE. Intraoperative MRI for the resection of intracranial vascular malformation. Stroke 2000;287-295.

Sato Y, Westin CF, Bhalerao A, Nakajima S, Shiraga N, Tamura S, Kikinis R. Tissue classification based on 3d local intensity structure for volume rendering. IEEE Trans on Visualization and Computer Graphics 2000;6(2):160-180.

Westin CF, Richolt J, Moharir V, Kikinis R. Affine adaptive filtering of CT data. Medical Image Analysis 2000;4(2):161-172.

1999

Gauch JM, Gauch S, Bouix S, Zhu X. Real time video scene detection and classification. Information processing and Management 1999;35(3):381-400.

1998