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San Jose Estepar R, Washko GG, Silverman EK, Reilly JJ, Kikinis R, Westin CF. Airway inspector: An open source application for lung morphometry. In First International Workshop on Pulmonary Image Processing. New York City, USA, 2008;293-302. Available on-line: www.lulu.com/content/3507981.
Maddah M, Zöllei L, Grimson WEL, Westin CF, Wells WM. A mathematical framework for incorporating anatomical knowledge in DT-MRI analysis. In Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on Biomedical Imaging, ISBI 2008. Paris, France, 2008;.
Rathi Y, Michailovich O, Bouix S, Shenton ME. Directional functions for orientation distribution estimation. In Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on Biomedical Imaging, ISBI 2008. Paris, France, 2008;.
Michailovich O, Rathi Y. On approximation of orientation distributions by means of spherical ridgelets. In Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on Biomedical Imaging, ISBI 2008. Paris, France, 2008;.
Rathi Y, Dambreville S, Neithammer M, Malcolm J, Levitt J, Shenton ME, Tannenbaum A. Segmenting images analytically in shape space. In Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on Biomedical Imaging, ISBI 2008. Paris, France, 2008;.
Rosenberger G, Kubicki M, Nestor PG, Connor E, Bushell GB, Markant D, Niznikiewicz M, Westin CF, Kikinis R, Saykin AJ, McCarley RW, Shenton ME. Age-related deficits in fronto-temporal connections in schizophrenia: A diffusion tensor imaging study. Schizophrenia Research 2008;102:181 - 188.
Vosburgh KG, Stoll J, Noble V, Pohl K, San Jose Estepar R, Takacs B. Image registration assists novice operators in ultrasound assessment of abdominal trauma. Studies in Health Technology and Informatics 2008;132:532 - 537.
Jolley M, Stinstra J, Weinstein D, Pieper S, Estepar RSJ, Kindlmann G, MacLeod R, Brooks DH, Triedman JK. Open-source environment for interactive finite element modeling of optimal icd electrode placement. In Functional Imaging and Modeling of the Heart, volume 4466 of Lecture Notes in Computer Science. Springer, 2007;373-382.
San Jose Estepar R. Local Structure Tensor for Multidimensional Signal Processing. Applications to Medical Image Analysis. Louvain-la-Neuve,Belgium: Presses universitaires de Louvain, 2007. ISBN: 978-2-87463-101-6.
San Jose Estepar R, Stylopoulos N, Ellis R, Samset E, Westin CF, Thompson C, Vosburgh K. Towards scarless surgery: An endoscopic ultrasound navigation system for transgastric access procedures. Computer Aided Surgery 2007;12(6):311-324.
Martin-Fernandez M, Cordero-Grande L, Munoz-Moreno E, Alberola-Lopez C. Techniques in the contour detection of kidneys and their applications. In CT Leondes, ed., Biomechanical Systems Technology. Volume 4: General Anatomy. World Scientific Publishing Company, 2007;273-334. ISBN: 981-270-984-3.
Maddah M, Wells WM, Warfield S, Westin CF, Grimson WEL. A spatial model of white matter fiber tracts. In Proceedings of the ISMRM Annual Meeting (ISMRM'07). 2007;1.
Kindlmann G, Tricoche X, Westin CF. Delineating white matter structure in diffusion tensor MRI with anisotropy creases. Medical Image Analysis 2007;11(5):492-502.
Kindlmann G, Ennis DB, Whitaker RT, Westin CF. Diffusion tensor analysis with invariant gradients and rotation tangents. IEEE Transactions on Medical Imaging 2007;26(11):1483-1499.
Krissian K, Westin CF, Kikinis R, Vosburgh K. Oriented speckle reducing anisotropic diffusion. IEEE Trans Image Process 2007 2007;1412-1424.
Peled S. New perspectives on the sources of white matter dti signal. IEEE Transactions on Medical Imaging 2007;26(11):1448-1455.
O'Donnell LJ, Westin CF. Automatic tractography segmentation using a high-dimensional white matter atlas. IEEE Transactions on Medical Imaging 2007;26(11):1562-1575.
Lemmond ME, O'Donnell LJ, Whalen S, Golby AJ. Characterizing diffusion along white matter tracts affected by primary brain tumors. In Human Brain Mapping 2007. 2007;.
Suarez-Santana E, Nebot R, Westin CF, Ruiz-Alzola J. Fast blockmatching registration with entropy-based similarity. In Tenth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI '07), Lecture Notes in Computer Science. Brisbane, Australia, 2007;178-185.
O'Donnell LJ, Westin CF, Golby AJ. Tract-based morphometry. In Tenth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI '07), volume 4792 of Lecture Notes in Computer Science. Brisbane, Australia, 2007;161-168.
Ziyan U, Sabuncu MR, O'Donnell LJ, Westin CF. Nonlinear registration of diffusion mr images based on fiber bundles. In Tenth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI '07), volume 4791 of Lecture Notes in Computer Science. Brisbane, Australia, 2007;351-358.
Bhalerao A, Westin CF. Hyperspherical von mises-fisher mixture (hvmf) modelling of high angular resolution diffusion mri. In Tenth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI '07), volume 4791 of Lecture Notes in Computer Science. Brisbane, Australia, 2007;236-243.
Niethammer M, Bouix S, Aja-Fernandez S, Westin CF, Shenton ME. Outlier rejection for diffusion weigthed imaging. In Tenth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI '07), volume 4791 of Lecture Notes in Computer Science. Brisbane, Australia, 2007;161-168.
Aja-Fernandez S, Alberola-Lopez C, Westin CF. Signal lmmse estimation from multiple samples in mri and dt-mri. In Tenth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI '07), volume 4792 of Lecture Notes in Computer Science. Brisbane, Australia, 2007;368-375.
Dransfield MT, Washko GR, Foreman MG, Estepar RSJ, Reilly J, Bailey WC. Gender differences in the severity of ct emphysema in copd. Chest 2007;132:464-470.
Bergmann O, Kindlmann G, Peled S, Westin CF. Two-tensor fiber tractography. In Biomedical Imaging: From Nano to Macro, 2007. ISBI 2007. 4th IEEE International Symposium on Biomedical Imaging, ISBI 2007. Arlington, VA, 2007;796-799.
Kubicki M, McCarley R, Westin CF, Park HJ, Maier S, Kikinis R, Jolesz FA, Shenton ME. A review of diffusion tensor imaging studies in schizophrenia. Journal of Psychiatric Research 2007;41:15-30.
Pujol S, Frerichs K, Norbash A, Kikinis R, Westin CF. Preliminary results of nonfluoroscopy-based 3d navigation for neurointerventional procedures. J Vasc Interv Radiol 2007;18:289-298.
Gurrera RJ, Nakamura M, Kubicki M, Dickey CC, Niznikiewicz MA, Voglmaier MM, McCarley RW, Shenton ME, Westin CF, Maier SE, Seidman LJ. The uncinate fasciculus and extraversion in schizotypal personality disorder: a diffusion tensor imaging study. Schizophrenia Research 2007;90:360-362.
Ziyan U, Sabuncu MR, Grimson WEL, Westin CF. A robust algorithm for fiber-bundle atlas construction. In Mathematical Methods in Biomedical Image Analysis (MMBIA 2007): 2007 IEEE Workshop, ICCV 2007 workshop. Rio de Janeiro, Brazil, 2007;.
Maddah M, III WMW, Warfield SK, Westin CF, Grimson WEL. Probabilistic clustering and quantitative analysis of white matter fiber tracts. In Information Processing in Medical Imaging: 20th International Conference (IPMI 2007), volume 20 of Inf Process Med Imaging. Kerkrade, The Netherlands, 2007;372-383.
Kindlmann G, Estepar RSJ, Niethammer M, Haker S, Westin CF. Geodesic-loxodromes for diffusion tensor interpolation and difference measurement. In Tenth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'07), Lecture Notes in Computer Science 4791. Brisbane, Australia, 2007;1-9.
Vosburgh KG, San Jose Estepar R. Natural orifice transluminal endoscopic surgery (notes): An opportunity for augmented reality guidance. Studies in Health Technology and Informatics 2007;125:485-490.
Vosburgh KG, Stylopoulos N, San Jose Estepar R, Ellis RE, Samset E, Thompson CC. EUS with CT improves efficiency and structure identification over conventional EUS. Gastrointestinal Endoscopy 2007;65(6):866-870.
Hersh CP, Washko GR, Jacobson FL, Gill R, San Jose Estepar R, Reilly JJ, Silverman EK. Interobserver variability in the determination of upper lobe-predominant emphysema. Chest 2007;131:424-431.
Bouix S, Martin-Fernandez M, Ungar L, Koo MNMS, McCarley RW, Shenton ME. On evaluating brain tissue classifiers without a ground truth. NeuroImage 2007;36:1207-1224.
Martin-Fernandez M, Alberola-Lopez C, Ruiz-Alzola J, Westin CF. Sequential anisotropic wiener filtering applied to 3D MRI data. Magnetic Resonance Imaging 2007;25:278-292.
de Luis-Garcia R, Aja-Fernandez S, Cardenez-Almeida R, Martin-Fernandez M, Alberola-Lopez C. Analysis of ultrasound images based on local statistics. application to the diagnosis of develpmental dysplasia of the hip. In IEEE International Ultrasonics Symposium. New York, NY, USA, 2007;2531-2534.
Martin-Fernandez M, Cardenes R, Alberola-Lopez C. Parameter estimation of the homodyned k distribution based on signal to noise ratio. In IEEE International Ultrasonics Symposium. New York, NY, USA, 2007;158-161.
Cardenes R, Tristan A, Cordero-Grande L, Munoz-Moreno E, Martin-Fernandez M. UsimagTool: an interactive tool for ultrasound image processing. In IEEE Seventh International Symposium on BioInformatics and BioEngineering. Boston, MA, USA, 2007;.
Aja-Fernandez S, Martin-Fernandez M, Alberola-Lopez C. Tissue identification in ultrasound images using rayleigh local parameter estimation. In IEEE Seventh International Symposium on BioInformatics and BioEngineering. Boston, MA, USA, 2007;1129-1133.
San-Jose-Revuelta L, Martin-Fernandez M, Alberola-Lopez C. Neural network-assisted fiber tracking of synthetic and white matter DT-MR images. In Lecture Notes in Engineering and Computer Science, World Congress on Engineering. London, UK, 2007;618-623.
San-Jose-Revuelta L, Martin-Fernandez M, Alberola-Lopez C. A new proposal for 3D fiber tracking in synthetic diffusion tensor magnetic resonance images. In IEEE International Symposium on Signal Processing and its Applications. Sharjah, United Arab Emirates, 2007;.
Dauguet J, Peled S, Berezovskii V, Delzescaux T, Warfield SK, Born R, Westin CF. Comparison of fiber tracts derived from in-vivo dti tractography with 3d histological neural tract tracer reconstruction on a macaque brain. NeuroImage 2007;37:530-538.
Nakamura M, Salisbury DF, Hirayasu Y, Bouix S, Pohl KM, Yoshida T, Koo M, Shenton ME, McCarley RW. Neocortical gray matter volume in first episode schizophrenia and first episode affective psychosis: A cross-sectional and longitudinal mri study. Biological Psychiatry 2007;.
Pohl KM, Bouix S, Nakamura M, Rohlfing T, McCarley RW, Kikinis R, Grimson WEL, Shenton, Wells WM. A hierarchical algorithm for mr brain image parcellation. IEEE Transa on Medical Imaging 2007;.
Pohl KM, Bouix S, Shenton ME, McCarley RW, Grimson WEL, Kikinis R, M W. Using the logarithm of odds to define a vector space on probablistic atlases. Medical Image Analysis Press 2007;.
Andersson K, Westin CF, Knutsson H. Prediction from off-grid samples using continuous normalized convolution. Signal Processing 2007;87(3):353-356.
Siddiqi K, Zhang J, Macrini D, Shokoufandeh A, Bouix S, Chen R, Dickinson S. Retrieving articulated 3-d models using medial surfaces. Machine Vision and Applications 2007;.
de-la Viuda-Garcia P, de-la Higuera PC, Cordero-Grande L, Vegas-Sanchez-Ferrero G, Martin-Fernandez M, Alberola-Lopez C. Partial volume effect modelling in cardiac mri by means of mixture of gaussians. In Fiveteenth Annual Symposium of the Spanish Biomedical Engineering Society. Cartagena, Spain, 2007;145-148. In Spanish.
Ennis DB, Kindlmann G. Orthogonal tensor invariants and the analysis of diffusion tensor magnetic resonance images. Magnetic Resonance in Medicine 2006;55(1):136-146.
Haidar H, Bouix S, Levitt JJ, McCarley RW, Shenton ME, Soul JS. Characterizing the shape of anatomical structures with poisson's equation. IEEE Transactions on Medical Imaging 2006;25(10):1249-1257.
Koo M, Dickey CC, Park H, Kubicki M, Ji NY, Bouix S, Pohl KM, J J Levitt MES M Nakamura, McCarley RW. Smaller neocortical gray matter and larger sulcal csf volumes in neuroleptic-naive females with schizotypal personality disorder. Archives of General Psychiatry 2006;63:1090-1100.
Suarez-Santana E, Nebot R, Westin CF, Ruiz-Alzola J. Fast Block Matching Registration with Entropy-based Similarity, 2006.
Peled S, Friman O, Jolesz F, Westin CF. Geometrically constrained two-tensor model for crossing tracts in DWI. Magnetic Resonance Imaging 2006;24:1263-1270.
Kindlmann G, Westin CF. Diffusion tensor visualization with glyph packing. IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2006) 2006;12(5):1329-1335.
Mulkern R, Davis P, Haker S, San Jose Estepar R, Panych L, Maier S, Rivkin M. Complementary aspects of diffusion imaging and fmri; i: structure and function. Magnetic Resonance Imaging 2006;24(4):463-474.
O'Donnell L. Cerebral White Matter Analysis Using Diffusion Imaging. Ph.D. thesis, Massachusetts Institute of Technology, 2006.
Kindlmann G, Tricoche X, Westin CF. Anisotropy creases delineate white matter structure in diffusion tensor MRI. In Ninth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'06), Lecture Notes in Computer Science 4190. Copenhagen, Denmark, 2006;126-133.
O'Donnell L, Westin CF. High-dimensional white matter atlas generation and group analysis. In Ninth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'06), Lecture Notes in Computer Science 4191. Copenhagen, Denmark, 2006;243-251.
Dauguet J, Peled S, Berezovskii V, Delzescaux T, Warfield SK, Born R, Westin CF. 3D histological reconstruction of fiber tracts and direct comparison with diffusion tensor MRI tractography. In Ninth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'06), Lecture Notes in Computer Science 4190. Copenhagen, Denmark, 2006;109-116.
Farnebäck G, Westin CF. Affine and deformable registration based on polynomial expansion. In Ninth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'06), Lecture Notes in Computer Science 4191. Copenhagen, Denmark, 2006;857-864.
Ziyan U, Tuch D, Westin CF. Segmentation of thalamic nuclei from DTI using spectral clustering. In Ninth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'06), Lecture Notes in Computer Science 4191. Copenhagen, Denmark, 2006;807-814.
Bergmann Ø, Kindlmann G, Lundervold A, Westin CF. Diffusion k-tensor estimation from q-ball imaging using discretized principal axes. In Nineth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'06), Lecture Notes in Computer Science 4191. Copenhagen, Denmark, 2006;268-275.
Niethammer M, Bouix S, Westin CF, Shenton ME. Fiber bundle estimation and parameterization. In Ninth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'06), Lecture Notes in Computer Science 4191. Copenhagen, Denmark, 2006;252-259.
San Jose Estepar R, Washko GG, Silverman EK, Reilly JJ, Kikinis R, Westin CF. Accurate airway wall estimation using phase congruency. In Ninth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'06), Lecture Notes in Computer Science 4191. Copenhagen, Denmark, 2006;125-134.
San Jose Estepar R, Stylopoulos N, Ellis RE, Samset E, Westin CF, Thompson C, Vosburgh K. Towards scarless surgery: An endoscopic-ultrasound navigation system for transgastric access procedures. In Ninth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'06), Lecture Notes in Computer Science 4190. Copenhagen, Denmark, 2006;445-453.
Vosburgh KG, Stylopoulos N, Thompson CC, Ellis RE, Samset E, San Jose Estepar R. Novel real time tracking interface improves the use of laparoscopic and endoscopic ultrasound in the abdomen. International Journal of Computer Assisted Radiology and Surgery 2006;1:282-284.
Niethammer M, San Jose Estepar R, Bouix S, Shenton M, Westin CF. On diffusion tensor estimation. In 28th IEEE EMBS. New York City, NY, USA, 2006;2622-2625.
San-Jose-Revuelta L, Martin-Fernandez M, Alberola-Lopez C. A new method for fiber tractography in diffusion tensor magnetic resonance images. In 2006 IEEE International Conference on Signal and Image Processing - ICSIP 2006, volume 1. Hubli, India, 2006;380-385.
Martin-Fernandez M, Munoz-Moreno E, Alberola-Lopez C. A speckle removal filter based on an anisotropic wiener filter and the rice distribution. In 2006 IEEE International Ultrasonics Symposium. Vancouver, Canada, 2006;1694-1697.
Brun A, Martin-Fernandez M, Acar B, Munoz-Moreno E, Cammoun L, Sigfridsson A, Sosa D, Svensson B, Herberthson M, Knutsson H. SIMILAR tensor arrays -a framework for storage of tensor data. In SIMILAR NoE Tensor Workshop. Las Palmas de Gran Canaria, Spain, 2006;.
Munoz-Moreno E, Suarez-Santana E, Martin-Fernandez M. Registration of dti. In SIMILAR NoE Tensor Workshop. Las Palmas de Gran Canaria, Spain, 2006;.
Merino-Caviedes S, Lopez-Ibanez D, Garcia-Avedillo J, Martin-Fernandez M. User interfaces to interact with tensor fields. a state-of-the-art analysis. In SIMILAR NoE Tensor Workshop. Las Palmas de Gran Canaria, Spain, 2006;.
Cordero-Grande L, de-la Higuera PC, Martin-Fernandez M, Alberola-Lopez C. Endocardium and epicardium contour modeling based on markov random fields and active contours. In 28th Annual International Conference of IEEE Engineering in Medicine and Biology Society, EMBC-2006. New York City, NY, USA, 2006;928-931.
San Jose Estepar R, Kubicki M, Shenton M, Westin CF. A kernel-based approach for user-guided fiber bundling using diffusion tensor data. In 28th IEEE EMBS. New York City, NY, USA, 2006;2626-2629.
Aja-Fernandez S, San Jose Estepar R, Alberola Lopez C, Westin CF. Image quality assessment based on local variance. In 28th IEEE EMBS. New York City, NY, USA, 2006;4815-4818.
Farneback G, Westin CF. Improving Deriche-style recursive gaussian filters. Journal of Mathematics in Imaging and Vision 2006;26(3).
Friman O, Farneback G, Westin CF. A Bayesian approach for stochastic white matter tractography. TMI 2006;25(8):965-978.
O'Donnell L, Westin CF. A high-dimensional fiber tract atlas. In Proceedings of the ISMRM Annual Meeting (ISMRM'06). Seattle, USA, 2006;1.
Madore B, Farneback G, Westin CF, Mendicuti MAD. A new strategy for respiration compensation, applied toward 3D free-breathing cardiac MR imaging. MRI 2006;24(6):727-737.
O'Donnell L, M K, Shenton ME, Dreusicke M, Grimson WEL, Westin CF. A method for clustering white matter fiber tracts. AJNR 2006;27(5).
Westin CF, Martin-Fernandez M, Alberola-Lopez C, Ruiz-Alzola J, Knutsson H. Tensor field regularization using normalized convolution and markov random fields in a bayesian framework. In J Weickert, H Hagen, eds., Visualization and Image Processing of Tensor Fields. Series: Mathematics and Visualization. Springer, 2006;381-398,464-467. ISBN:3-540-25032-8.
Kuroki N, Kubicki M, Salisbury PGNDF, Park HJ, Levitt JJ, Woolston S, Frumin M, Niznikiewicz M, Westin CF, Maier SE, McCarley R, Shenton ME. Fornix integrity and hippocampal volume in male schizophrenic patients. Biol Psychiatry 2006;60:22-31.
Casaseca JP, Martin-Fernandez M, Alberola-Lopez C. Weaning from mechanical ventilation: a multimodal signal analysis. IEEE Transactions on Biomedical Engineering 2006;53(7):1330-1345.
Ennis D, Kindlmann G, Rodriguez I, Helm P, McVeigh E. Visualization of tensor fields using superquadric glyphs. Magnetic Resonance in Medicine 2005;53(1):169-176.
Bouix S, Siddiqi K. Optics, mechanics, and hamilton-jacobi skeletons. Advances in Imaging and Electron Physics 2005;135:1-39.
Barlaud M, Bernsen NO, Coutaz J, Dugelay JL, Macq B, Martin-Fernandez M, Nigay L, Paterno F, Strinzis M, Tekalp M, Thiran JF, Tzovaras D, Vanderdonckt J, Valoshynovskiyi S. Fusion and fission. In S Daussogne, B Macq, eds., SIMILAR Dreams: Multimodal Interfaces in Our Future Live. Louvain la Neuve, Belgium: Presses Universitaired de Louvain, 2005;29-42.
Barlaud M, Bernsen NO, Coutaz J, Dugelay JL, Macq B, Martin-Fernandez M, Nigay L, Paterno F, Strinzis M, Tekalp M, Thiran JF, Tzovaras D, Vanderdonckt J, Valoshynovskiyi S. Ten major achievements. In S Daussogne, B Macq, eds., SIMILAR Dreams: Multimodal Interfaces in Our Future Live. Louvain la Neuve, Belgium: Presses Universitaired de Louvain, 2005;179-216.
Barlaud M, Bernsen NO, Coutaz J, Dugelay JL, Macq B, Martin-Fernandez M, Nigay L, Paterno F, Strinzis M, Tekalp M, Thiran JF, Tzovaras D, Vanderdonckt J, Valoshynovskiyi S. Ten major practical outcomes. In S Daussogne, B Macq, eds., SIMILAR Dreams: Multimodal Interfaces in Our Future Live. Louvain la Neuve, Belgium: Presses Universitaired de Louvain, 2005;217-240.
Barlaud M, Bernsen NO, Coutaz J, Dugelay JL, Macq B, Martin-Fernandez M, Nigay L, Paterno F, Strinzis M, Tekalp M, Thiran JF, Tzovaras D, Vanderdonckt J, Valoshynovskiyi S. Ten major challenges. In S Daussogne, B Macq, eds., SIMILAR Dreams: Multimodal Interfaces in Our Future Live. Louvain la Neuve, Belgium: Presses Universitaired de Louvain, 2005;241-247.
Friman O, Westin CF. Uncertainty in fiber tractography. In Eighth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'05), Lecture Notes in Computer Science 3749. Palm Springs, CA, USA, 2005;107-114.
Pichon E, Westin CF, Tannenbaum A. A Hamilton-Jacobi-Bellman approach to high angular resolution diffusion tractography. In Eighth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'05), Lecture Notes in Computer Science 3749. Palm Springs, CA, USA, 2005;180-187.
Martin-Fernandez M, Bouix S, Ungar L, McCarley RW, Shenton ME. Two methods for validating brain tissue classifiers. In Eighth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'05), Lecture Notes in Computer Science 3749. Palm Springs, CA, USA, 2005;515-522.
O'Donnell L, Westin CF. White matter tract clustering and correspondence in populations. In Eighth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'05), Lecture Notes in Computer Science 3749. Palm Springs, CA, USA, 2005;140-147.
Luboz V, Wu X, Krissian K, Westin C, Kikinis R, Cotin S, Dawson S. A segmentation and reconstruction technique for 3d vascular structures. In Eighth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'05), Lecture Notes in Computer Science 3749. Palm Springs, CA, USA, 2005;43-50.
San Jose Estepar R, Haker S, Westin CF. Riemannian mean curvature flow. In Lecture Notes in Computer Science: ISVC05, volume 3804 of Lecture Notes in Computer Science. 2005;613-620.
de Luis Garcia R, San Jose Estepar R, Alberola-Lopez C. Pull-push level sets: a new term to encode prior knowledge for the segmentation of teeth images. In Medical Imaging 2005: Image Processing, volume 5747 of Proceedings of SPIE. 2005;598-605.
San Jose Estepar R. Local Structure Tensor for Multidimensional Signal Processing. Applications to Medical Image Analysis. Ph.D. thesis, University of Valladolid, Spain, 2005.
Kubicki M, Westin CF, McCarley R, Shenton ME. The application of dti to investigate white matter abnormalities in schizophrenia. Ann NY Acad Sci 2005;1064:134-148.
Simmross-Wattenberg F, Carranza-Herrezuelo N, Palacios-Camarero C, de la Higuera JPC, Martin-Fernandez MA, Aja-Fernandez S, Ruiz-Alzola J, Westin CF, Alberola-Lopez C. Group-slicer: a collaborative extension of the 3D-slicer. Journal of Biomedical Informatics 2005;38(6).
Brun A, Westin CF, Haker S, Knutsson H. A tensor-like representation for averaging, filtering and interpolation of 3-d object orientation data. In Proceedings of the IEEE-ICIP. Genoa, Italy, 2005;1-104.
Brun A, Westin CF, Herberthson M, Knutsson H. Fast manifold learning based on riemannian normal coordinates. In Proceedings of the SCIA;05. Joensuu, Finland, 2005;920-929.
Friman O, Morocz I, Westin CF. Examining the whiteness of fMRI noise. In Proceedings of the ISMRM Annual Meeting (ISMRM'05). Miami, USA, 2005;.
Krissian K, Vosburgh K, Kikinis R, Westin CF. Speckle-constrained anisotropic diffusion for ultrasound images. In Proceedings of IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05). San Diego CA, USA, 2005;547 - 552.
Friman O, Westin CF. Resampling fMRI time series. NeuroImage 2005;25(3):859-867.
Kubicki M, Park HJ, Westin CF, Nestor P, Mulkern R, Maier SE, Niznikiewicz M, Connor E, Levitt J, Frumin M, Kikinis R, Jolesz FA, McCarley R, Shenton ME. DTI and MTR abnormalities in schizophrenia: Analysis of white matter integrity. Neuroimage 2005;26:1109-1118.
Nakamura M, McCarley RW, Kubicki M, Dickey CC, Niznikiewicz MA, Voglmaier MM, Seidman LJ, Maier SE, Westin CF, Kikinis R, Shenton ME. Fronto-temporal disconnectivity in schizotypal personality disorder: A diffusion tensor imaging study. Biological Psychiatry 2005;58(6):468-478.
Bouix S, Martin-Fernandez M, Ungar L, Shenton M, McCarley R. Automatic evaluation of brain MR segmentation techniques by level of agreement. In 11th Annual Meeting of the Organization for the Human Brain Mapping. Toronto, ON, Canada, 2005;1-3.
Martin-Fernandez M, Alberola-Lopez C. On low order moments for the homodyned k distribution. Ultrasonics 2005;43:283-290.
Martin-Fernandez M, Alberola-Lopez C. An approach for contour detection of human kidneys from ultrasound images using markov random fields and active contours. Medical Image Analysis 2005;9(1):1-23.
Krissian K, Westin CF. Fast sub-voxel re-initialization of the distance map for level set methods. Pattern Recognition Letters 2005;26(10):1532-1542.
Verhey J, , Wisser J, Keller T, Westin CF, Kikinis R. Rigid overlay of volume sonography and MR image data. Computerized Medical Imaging and Graphics 2005;29:243-249.
Martin-Fernandez MA, Munoz-Moreno E, Martin-Fernandez M, Alberola-Lopez C. Articulated registration: Elastic registration based on a wire-model. In JM Fitzpatrick, JM Reinhardt, eds., Medical Imaging 2005: Image Processing. San Diego, CA, USA: SPIE Press, 2005;182-191. Proc. of the SPIE 5747.
Yoo SS, Park HJ, Soul JS, Mamata H, Westin CF, Bassan H, Du Plessis AJ, Robertson RL, Ringer SA, Maier SE, Volpe JJ, Zientara GP. In vivo visualization of white matter fiber tracts of preterm- and term- infant brain with diffusion tensor MRI. Investigative Radiology 2005;40(2):110-115.
Warfield SK, Haker SJ, Talos IF, Kemper CA, Weisenfeld N, Mewes A, Goldberg-Zimring D, Zou KH, Westin CF, Wells WM, Tempany CMC, Golby A, Black PM, Jolesz FA, Kikinis R. Capturing intraoperative deformations: Research experience at the surgical planning laboratory. Medical Image Analysis 2005;9:145-162.
Hoge WS, Westin CF. Identification of translational displacements between N-dimensional data sets using the high order SVD and phase correlation. IEEE Transactions on Image Processing 2005;14(7):884-889.
Ruiz-Alzola J, Alberola-Lopez C, Westin CF. Kriging filters for multidimensional signal processing. Signal Processing 2005;85(2):413-439.
Wiegand LC, Warfield SK, Levitt JJ, Hirayasu Y, Salisbury DF, Heckers S, Bouix S, Schwartz D, Spencer M, Dickey CC, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. An in vivo mri study of prefrontal cortical complexity in first episode psychosis. American Journal of Psychiatry 2005;162:65-70.
Bouix S, Siddiqi K, Tannenbaum A. Flux driven automatic centerline extraction. Medical Image Analysis 2005;9(3):209-221.
Bouix S, Pruessner JC, Collins DL, Siddiqi K. Hippocampal shape analysis using medial surfaces. NeuroImage 2005;25(4):1077-1089.
Brun A, Knutsson H, Park HJ, Shenton ME, Westin CF. Clustering fiber tracts using normalized cuts. In Seventh International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'04), Lecture Notes in Computer Science. Rennes - Saint Malo, France, 2004;368-375.
O'Donnell L, Grimson WEL, Westin CF. Interface detection in DTMRI. In Seventh International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'04), Lecture Notes in Computer Science. Rennes - Saint Malo, France, 2004;360-367.
Castano-Moraga CA, Rodrigues-Florido MA, Alvarez L, Westin CF, Ruiz-Alzola J. Anisotropic interpolation of DT-MRI data. In Seventh International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'04), Lecture Notes in Computer Science. Rennes - Saint Malo, France, 2004;343-350.
San Jose Estepar R, Brun A, Westin CF. Robust generalized total least squares iterative closest point registration. In Seventh International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'04), Lecture Notes in Computer Science. Rennes - Saint Malo, France, 2004;234-241.
Friman O, Westin CF. Bias in resampling-based thresholding of statistical maps in fMRI. In Seventh International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'04), Lecture Notes in Computer Science. Rennes - Saint Malo, France, 2004;687-694.
Park HJ, Shenton ME, Westin CF. An analysis tool for quantification of diffusion tensor imaging. In Seventh International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'04), Lecture Notes in Computer Science. Rennes - Saint Malo, France, 2004;1040-1041.
Martin-Fernandez M, Westin CF, Alberola-Lopez C. 3d bayesian regularization of diffusion tensor MRI using multivariate gaussian markov random fields. In Seventh International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'04), Lecture Notes in Computer Science. Rennes - Saint Malo, France, 2004;351-359.
Kozinska D, Holland C, Krissian K, Westin CF, Guttmann CRG. A method for the analysis of the geometrical relationship between white matter pathology and the vascular architecture of the brain. Neuroimage 2004;22:1671-1678.
Park HJ, Westin CF, Kubicki M, Maier SE, Niznikiewicz M, Baer A, Frumin M, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. White matter hemisphere asymmetries in healthy subjects and in schizophrenia: A diffusion tensor MRI study. Neuroimage 2004;24:213-223.
Friman O, Borga M, Lundberg P, Knutsson H. Detection and detrending in functional MRI data analysis. NeuroImage 2004;22(2):645-655.
Alberola-Lopez C, Martin-Fernandez M, Ruiz-Alzola J. Comments on: A methodology for evaluation of boundary detection algorithms on medical images. IEEE Transactions on Medical Imaging 2004;23(5):658-660.
Friman O. Subspace models for functional MRI data analysis. In Proceedings of 2004 IEEE International Symposium on Biomedical Imaging. Arlington, VA, USA, 2004;1-4. Invited Paper.
Brun A, Westin CF, Haker S, Knutsson H. A novel approach to averaging, filtering and interpolation of 3-D object orientation data. In Proceedings of the Swedish Symposium on Image Analysis. Uppsala, Sweden, 2004;5-8. Available on request.
Park HJ, Kubicki M, Westin CF, Talos IF, Brun A, Pieper S, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Method for combining information from white matter fiber tracking and gray matter parcellation. American Journal of Neuroradiology 2004;25:1318-1324.
Maier SE, Vajapeyam S, Mamata H, Westin CF, Jolesz FA, Mulkern RV. Biexponential diffusion tensor analysis of human brain diffusion data. Magnetic Resonance in Medicine 2004;51:321-330.
Kubicki M, Maier SE, Westin CF, Mamata H, Ersner-Hershfield H, San Jose Estepar R, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Comparison of single-shot echo-planar and line scan protocols for diffusion tensor imaging. Academic Radiology 2004;11(2):224-232.
Levitt JJ, Westin CF, Nestor PG, San Jose Estepar R, Dickey CC, Voglmaier MM, Seidman LJ, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Shape of the caudate nucleus and its cognitive correlates in neuroleptic-naive schizotypal personality disorder. Biological Psychiatry 2004;55:177-184.
Krissian K, Westin CF. Fast sub-voxel reinitialization of the distance map for level set methods. Technical Report 0001, Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Laboratory of Mathematics in Imaging, 2004. ISSN.
Hans A, Krissian K, Schoepf UJ, Kikinis R, Westin CF. Using 3d convex hulls to detect coronary artery stenoses and atherosclerotic vessel wall lesions in contrast enhanced mdct images. Technical Report 0002, Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Laboratory of Mathematics in Imaging, 2004. ISSN.
Krissian K, Kikinis R, Westin CF. Algorithms for extracting vessel centerlines. Technical Report 0003, Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Laboratory of Mathematics in Imaging, 2004. ISSN.
Krissian K, Vosburgh K, Kikinis R, Westin CF. Anisotropic diffusion of ultrasound constrained by speckle noise model. Technical Report 0004, Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Laboratory of Mathematics in Imaging, 2004. ISSN.
Pohl K, Grimson WEL, Bouix S, Kikinis R. Anatomical guided segmentation with non-stationary tissue class distributions in an expectation-maximization framework. In ISBI. Arlington, VA, USA: IEEE, 2004;81-84.
Haidar H, Bouix S, Levitt J, McCarley RW, Shenton ME, Soul JS. An elliptic pde approach for shape characterization. In EMBS. san Francisco, CA, USA: IEEE, 2004;.
Haidar H, Bouix S, Levitt J, Dickey CC, McCarley RW, Shenton ME, Soul JS. Characterizing the shape of anatomical structures with poisson's equation. In MICCAI, volume 3216 of Lecture Notes in Computer Science. Saint Malo, France: Springer, 2004;266-273.
Bouix S, Ungar L, Dickey CC, McCarley RW, Shenton ME. Evaluating automatic brain tissue classifiers. In MICCAI, volume 3216 of Lecture Notes in Computer Science. Saint Malo, France: Springer, 2004;1038-1039.
Hoge WS. Subspace identification extension to the phase correlation method. IEEE Transactions on Medical Imaging 2003;22(2):277-280.
Friman O. Adaptive Analysis of Functional MRI Data. Ph.D. thesis, Linköping University, Sweden, 2003. Dissertation No 836, ISBN 91-7373-699-6.
Friman O, Borga M, Lundberg P, Knutsson H. Adaptive analysis of fMRI data. NeuroImage 2003;19(3):837-845.
Watanabe M, Kikinis R, Westin CF. Level set-based integration of segmentation and computational fluid dynamics for flow correction in phase contrast angiography. Academic Radiology 2003;10(12):1416-23.
Park HJ, Kubicki M, Shenton ME, Guimond A, McCarley RW, Maier SE, Kikinis R, Jolesz FA, Westin CF. Spatial normalization of diffusion tensor MRI using multiple channels. Neuroimage 2003;20(4):1995-2009.
San Jose Estepar R, Martin-Fernandez M, Caballero-Martinez P, Alberola-Lopez C, Ruiz-Alzola J. A theoretical framework to three-dimensional ultrasound reconstruction from irregularly-sample data. Ultrasound in Medicine and Biology 2003;29(2):255-269.
Kubicki M, Westin CF, Maier SE, Mamata H, Frumin M, Ernst-Hirshefeld H, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Cingulate fasciculus integrity disruption in schizophrenia: A magnetic resonance diffusion tensor imaging study. Biological Phychiatry 2003;54:1171-1180.
Castano-Moraga CA, Westin CF, Ruiz-Alzola J. Homomorphic filtering of DT-MRI fields. In Sixth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'03). Montreal, Canada, 2003;990-991.
San Jose Estepar R, Martin-Fernandez M, Alberola-Lopez C, Ellsmere J, Kikinis R, Westin CF. Freehand ultrasound reconstruction based on roi prior modeling and normalized convolution. In RE Ellis, TM Peters, eds., Sixth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'03), Lecture Notes in Computer Science 2879. Montreal, Canada: Springer Verlag, 2003;382-390.
Talos IF, O'Donnell L, Westin CF, Warfield SK, Wells WM, Yoo SS, Panych L, Golby A, Mamata H, Maier SE, Ratiu P, Guttmann CG, Black PML, Jolesz FA, Kikinis R. Diffusion tensor and functional MRI fusion with anatomical mri for image guided neurosurgery. In Sixth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'03). Montreal, Canada, 2003;407-415.
Martin-Fernandez M, Alberola-Lopez C, Ruiz-Alzola J, Westin CF. Regularization of diffusion tensor maps using a non-gaussian markov random field approach. In RE Ellis, TM Peters, eds., Sixth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'03), Lecture Notes in Computer Science 2879. Montreal, Canada: Springer Verlag, 2003;92-100.
Bhalerao A, Westin CF. Tensor splats: Visualising tensor fields by texture mapped volume rendering. In Sixth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'03). Montreal, Canada, 2003;294-901.
Ruiz-Alzola J, Suarez E, Alberola-Lopez C, Warfield SK, Westin CF. Geostatistical medial image registration. In Sixth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'03). Montreal, Canada, 2003;894-901.
Hoge WS, Mitsouras D, Rybicki FR, Mulkern RV, Westin CF. Registration of multi-dimensional image data via sub-pixel resolution phase correlation. In IEEE Intl. Conf. on Image Processing (ICIP-03). Barcelona, Spain, 2003;707-710.
de Luis R, Martin-Fernandez M, Martin M, Alberola-Lopez C. A fully automatic algorithm for contour detection of bones in hand radiographs using active contours. In Proceedings of the IEEE International Conference on Image Processing (ICIP'03), volume III. Barcelona, Spain, 2003;421-424.
Krissian K, Ellsmere J, Vosburgh K, Kikinis R, Westin CF. Multiscale segmentation of the aorta in 3d ultrasound images. In 25th Annual Int. Conf. of the IEEE Engineering in Medicine and Biology Society (EMBS). Cancun, Mexico, 2003;638-641.
de Luis R, Martin-Fernandez M, Martin M, Alberola-Lopez C. A model-based algorithm for the automatic segmentation of metacarpals in hand-wrist radiographs using active contours. In Proceedings of the Third Annual Meeting of the International Society for Computer Assisted Orthopaedic Surgery (CAOS'03). Marbella, Spain, 2003;80-81.
Sigfridsson A, San Jose Estepar R, Wigstrom L, Alberola-Lopez C, Westin CF. Diffusion tensor visualization using random field correlation and volume rendering. In RM Diaz, AQ Arencibia, eds., Proc. of th 9th International Workshop on Computer Aided Systems Theory. Las Palmas de Gran Canaria, Spain: Universidad de Las Palmas de Gran Canaria, 2003;41-45.
San Jose Estepar R, Alberola-Lopez C, Ruiz-Alzola J, Kikinis R, Westin CF. Shape alignment based on phase spectrum and ica. In RM Diaz, AQ Arencibia, eds., Computer Aided Systems Theory (EUROCAST'03). Las Palmas de Gran Canaria, Spain: Universidad de Las Palmas de Gran Canaria, 2003;63-66.
Krissian K, Westin CF. Fast and accurate redistancing for level set methods. In RM Diaz, AQ Arencibia, eds., Computer Aided Systems Theory (EUROCAST'03). Las Palmas de Gran Canaria, Spain: Universidad de Las Palmas de Gran Canaria, 2003;48-51.
Westin CF, Knutsson H. Tensor field regularization using normalized convolution. In RM Diaz, AQ Arencibia, eds., Computer Aided Systems Theory (EUROCAST'03), LNCS 2809. Las Palmas de Gran Canaria, Spain: Springer Verlag, 2003;564-572.
Rodriguez-Florido MA, Cardenes R, Westin CF, Alberola-Lopez C, Ruiz-Alzola J. Anisotropic regularization of posterior probability maps using vector space projections. In RM Diaz, AQ Arencibia, eds., Computer Aided Systems Theory (EUROCAST'03), Lecture Notes in Computer Science 2809. Las Palmas de Gran Canaria, Spain: Springer Verlag, 2003;597-606.
Suarez E, Santana JA, Rovaris E, Westin CF, Ruiz-Alzola J. Fast entropy-based nonrigid registration. In RM Diaz, AQ Arencibia, eds., Computer Aided Systems Theory (EUROCAST'03), Lecture Notes in Computer Science 2809. Las Palmas de Gran Canaria, Spain: Springer Verlag, 2003;607-615.
Martin-Fernandez M, San Jose Estepar R, Westin CF, Alberola-Lopez C. A novel gauss-markov random field approach for regularization of diffusion tensor maps. In R Moreno-Diaz, F Pichler, eds., Ninth International Conference on Computer Aided Systems Theory (EUROCAST'03), Lecture Notes in Computer Science 2809. Las Palmas de Gran Canaria, Spain: Springer Verlag, 2003;506-517.
Martin-Fernandez M, San Jose Estepar R, Westin CF, Alberola-Lopez C. A novel gauss-markov random field approach for regularization of diffusion tensor maps. In Abstracts of the Ninth International Conference on Computer Aided Systems Theory (EUROCAST'03). Las Palmas de Gran Canaria, Spain, 2003;29-32.
Brun A, Park HJ, Knutsson H, Westin CF. Coloring of DT-MRI fiber traces using laplacian eigenmaps. In RM Diaz, AQ Arencibia, eds., Computer Aided Systems Theory (EUROCAST'03), Lecture Notes in Computer Science 2809. Las Palmas de Gran Canaria, Spain: Springer Verlag, 2003;564-572.
Martin M, Martin-Fernandez M, Alberola-Lopez C. Automatic bone age assessment: A registration approach. In M Sonka, JM Fitzpatrick, eds., Medical Imaging 2003: Image Processing. San Diego, CA, USA: SPIE Press, 2003;1765-1776. Proceedings of the SPIE 5032.
Warfield SK, Talos F, Kemper C, O'Donnell L, Westin CF, Wells WM, Black PML, Jolesz FA, Kikinis R. Capturing brain deformation. In Surgery Simulation and Soft Tissue Modeling, International Symposium, IS4TM 2003, LNCS 2673. Juan-Les-Pins, France: Springer Verlag, 2003;203-217.
Bouix S. Medial Surfaces. Ph.D. thesis, School of Computer Science, McGill University, 2003.
Bouix S, Siddiqi K, Tannenbaum A. Flux driven fly throughs. In Proceedings of IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'03). Madison, WI, USA: IEEE Computer Society, 2003;449-454.
Friman O, Borga M, Lundberg M, Tyl��n U, Knutsson H. Recognizing emphysema - A neural network approach. In Proceedings of 16th International Conference on Pattern Recognition. 2002;1-4.
Friman O, Borga M, Lundberg P, Knutsson H. Hierarchical temporal blind source separation of fMRI data. In Proceedings of the ISMRM Annual Meeting (ISMRM'02). Honolulu, Hawaii, 2002;1-2.
Friman O, Borga M, Lundberg P, Knutsson H. Detecting neural activity in fMRI using maximum correlation modeling. NeuroImage 2002;15(2):386-395.
Friman O, Borga M, Lundberg P, Knutsson H. Exploratory fMRI analysis by autocorrelation maximization. NeuroImage 2002;16(2):454-464.
Kubicki M, Westin CF, Maier SE, Mamata H, Frumin M, Ernst-Hirshefeld H, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Diffusion tensor imaging and its application to neuropsychiatric disorders. Harvard Rev of Psychiatry 2002;10:234-336.
Kubicki M, Westin CF, Maier SE, Frumin M, Nestor PG, Salisbury D, Kikinis R, Jolesz FA, McCarley RW, Shenton ME. Uncinate fasciculus findings in schizophrenia: A magnetic resonance diffusion tensor imaging study. AmJPsych 2002;159:813-820.
Mamata H, Mamata Y, Westin CF, Shenton ME, Jolesz FA, Maier SE. High-resolution line-scan diffusion-tensor MRI of white matter fiber tract anatomy. American Journal of NeuroRadiology 2002;32:67-75.
Westin CF, Maier SE, Mamata H, Nabavi A, Jolesz FA, Kikinis R. Processing and visualization of diffusion tensor MRI. Medical Image Analysis 2002;6(2):93-108.
Ruiz-Alzola J, Westin CF, Warfield SK, Alberola C, Maier SE, Kikinis R. Nonrigid registration of 3d tensor medical data. Medical Image Analysis 2002;6(2):143-161.
Maier SE, Mamata H, Westin CF, Mulkern RV. Magnetic resonance diffusion tensor imaging - a tool for non-invasive exploration of neuroanatomy. In International Symposium for Young Researchers on 'Modeling and their Applications 2002' (IA'02). Osaka, Japan, 2002;45-52.
Krissian K. Flux-based anisotropic diffusion applied to enhancement of 3d angiograms. IEEE Transactions on Medical Imaging 2002;21(11):1440-1442.
Martin-Fernandez M, Alberola-Lopez C. A bayesian approach to in vivo kidney ultrasound contour detection. In T Dohi, R Kikinis, eds., Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), Lecture Notes in Computer Science 2489. Tokyo, Japan: Springer Verlag, 2002;397-404.
Suarez E, Westin CF, Rovaris E, Ruiz-Alzola J. Nonridgid registration using regularized matching weighted by local structure. In Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'02). Tokyo, Japan, 2002;581-589. Best paper award.
Nain D, Haker S, Grimson WEL, Jr EC, Wells WM, Ji H, Kikinis R, Westin CF. Intra-patient prone to supine colon registration for synchronized colonoscopy. In Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'02). Tokyo, Japan, 2002;573-580.
Watanabe M, Kikinis R, Westin CF. Level set based integration of segmentation and computational fluid dynamics for flow correction in phase contrast angiography. In Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'02). Tokyo, Japan, 2002;405-412.
O'Donnell L, Haker S, Westin CF. New approaches to estimation of white matter connectivity in diffusion tensor MRI: Elliptic pdes and geodesics in a tensor-warped space. In Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'02). Tokyo, Japan, 2002;459-466.
Björnemo M, Brun A, Kikinis R, Westin CF. Regularized stochastic white matter tractography using diffusion tensor MRI. In Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'02). Tokyo, Japan, 2002;435-442.
Guimond A, Guttmann CRG, Warfield SK, Westin CF. Deformable registration of DT-MRI data based on transformation invariant tensor characteristics. In Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI'02). Washington (DC), USA, 2002;1-4.
Guimond A, Westin CF, Panych LP, Guttmann CRG. Deformable registration of DT-MRI data based on invariant tensor characteristics. In Proceedings of the Eighth International Conference on Functional Mapping of the Human Brain (HBM'02). Sendai, Japan, 2002;1-4.
Brun A, Björnemo M, Kikinis R, Westin CF. White matter tractography using sequential importance sampling. In Proceedings of the ISMRM Annual Meeting (ISMRM'02). Honolulu, Hawaii, 2002;1.
Zhu L, Bouix S, Haker S, Siddiqi K, Tannenbaum A. Angle-preserving mappings for the visualization of multi-branched vessels. In ICIP. Rochester, NY, 2002;945-948.
Siddiqi K, Bouix S, Tannenbaum A, Zucker SW. Hamilton-jacobi skeletons. International Journal of Computer Vision 2002;48(3):215-231.
San Jose Estepar R, Alberola-Lopez C, Ruiz J. Reshaping polygonal meshes with smoothed normals extracted from ultrasound volume data : an optimization approach. In MFI K Kirk Shung, ed., Medical Imaging 2001: Ultrasonic Imaging and Signal Processing, volume 4325 of Proceedings of SPIE. San Diego, USA: SPIE Press, 2001;462-472.
O'Donnell L. Semi-Automatic Medical Image Segmentation. Master's thesis, Massachusetts Institute of Technology, 2001.
MS DTG, MD AN, Kikinis R, BS LJO, PhD WELG, MD FPMB, PhD WMWI. An integrated visualization system for surgical planning and guidance using image fusion and an open mr. Journal od Magentic Resonance Imaging 2001;13:967 - 975.
Martin-Fernandez M, San Jose Estepar R, Alberola-Lopez C. Maximum likelihood contour estimation using beta-statistics in ultrasound images. In Proceedings of the IEEE-EURASIP Image and Signal Processing and Analysis (ISPA'01). Pula, Croatia, 2001;207-212.
Friman O, Carlsson J, Lundberg P, Borga M, Knutsson H. Detection of neural activity in functional MRI using canonical correlation analysis. Magnetic Resonance in Medicine 2001;45(2):323-330.
Ruiz-Alzola J, Kikinis R, Westin CF. Detection of landmarks in multidimensional tensor data. Signal Processing 2001;81:2243-2247.
Lorigo LM, Faugeras OD, Grimson WEL, Keriven R, Kikinis R, Nabavi A, Westin CF. Curves: Curve evolution for vessel segmentation. Medical Image Analysis 2001;5:195-206.
Westin CF, Wigström L, Loock T, Sjökvist L, Kikinis R, Knutsson H. Three-dimensional adaptive filtering in magnetic resonance angiography. Journal of Magnetic Resonance Imaging 2001;14:63-71.
Nabavi A, Black PML, Gering DT, Westin CF, Metha V, Pergolizzi RS, Jr, Ferrant M, Warfield SK, Hata N, Schwarts RB, Wells WM, Kikinis R, Jolesz FA. Serial intraoperative mr imaging of brain shift. Neurosurgery 2001;48:787-798.
Suarez E, Cardenes R, Alberola C, Westin CF, Ruiz-Alzola J. General approach to nonrigid registration: Decoupled optimization. In 23rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC '01). 2001;2422-2425.
Rodrigues-Florido MA, Ruiz-Alzola J, Westin CF. Artifact reduction in sinc interpolation using adaptive filtering. In Proc. IEEE International Conf on Image Processing. Thessaloniki, Greece, 2001;884-887.
Haber I, Kikinis R, Westin CF. Phase-driven finite element model for spatio-temporal tracking in tagged cardiac MRI. In W Niessen, ed., Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01). Utrecht, Netherlands: Springer Verlag, 2001;1332-1335.
O'Donnell L, Westin CF, Grimson WEL, Ruiz-Alzola J, Shenton ME, Kikinis R. Phase-based user-steered image segmentation. In W Niessen, ed., Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01). Utrecht, Netherlands: Springer Verlag, 2001;1022-1030.
Rodrigues-Florido MA, Krissian K, Ruiz-Alzola J, Westin CF. Comparison of two restoration techniques in the context of 3d medical imaging. In W Niessen, ed., Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01). Utrecht, Netherlands: Springer Verlag, 2001;1031-1039.
Martin-Fernandez M. Contributions to Automatic and Semiautomatic Analysis of Three-Dimensional Fetal Echography using Active Contours and Markov Random Fields. Ph.D. thesis, Valladolid University, Spain, 2001. In Spanish.
Shenton ME, Frumin M, McCarley RW, Maier SE, Westin CF, Fischer IA, Dickey C, Kikinis R. Morphometric magnetic resonance imaging studies: Findings in schizophrenia. In DD Dougherty, SL Rauch, eds., Psychiatric Neuroimaging Research: Contemporary Strategies. American Psychiatric Association, 2001;1-60.
Bouix S, Pruessner JC, Collins DL, Siddiqi K. Hippocampal shape analysis using medial surfaces. In MICCAI, volume 2208 of Lecture Notes in Computer Science. Utrecht, The Netherlands: Springer, 2001;33-40.
San Jose Estepar R, Rivera A, Pinacho M, Alberola-Lopez C, Ruiz J. Kalman filter technique applied to surface reconstruction and visualization from noisy volume data. In MFI K Kirk Shung, ed., Medical Imaging 2000: Ultrasonic Imaging and Signal ProcessingFourth International Conference on Medical Image Computing and, volume 3982 of Proceedings of SPIE. San Diego, USA: SPIE Press, 2000;396-407.
Kyriakos WE, Panych LP, Kacher DF, Westin CF, Bao SM, Mulkern RV, Jolesz FA. Sensitivity profiles from an array of coils for encoding and reconstruction in parallel (space rip). Magnetic Resonance in Medicine 2000;44:301-208.
Nabavi A, RS RSPJ, Martin C, Schwartz RB, Friedlander RM, Kacher D, Westin CF, Kikinis R, III EA, Black PML, Jolesz FA, Stieg PE. Intraoperative MRI for the resection of intracranial vascular malformation. Stroke 2000;287-295.
Sato Y, Westin CF, Bhalerao A, Nakajima S, Shiraga N, Tamura S, Kikinis R. Tissue classification based on 3d local intensity structure for volume rendering. IEEE Trans on Visualization and Computer Graphics 2000;6(2):160-180.
Kubicki MR, Westin CF, McCarley RW, Maier SE, Kikinis R, Shenton ME. Cingulum bundle in schizophrenics: Diffusion tensor study. In Supplement to Radiology, volume 217. 2000;296.
Ruiz-Alzola J, Westin CF, Warfield SK, Nabavi A, Kikinis R. Nonrigid registration of 3d scalar vector and tensor medical data. In AM DiGioia, S Delp, eds., Proceedings of MICCAI 2000, Third International Conference on Medical Image Computing and Computer-Assisted Intervention. Pittsburgh, 2000;541-550.
Alberola-Lopez C, Cardenes R, Martin-Fernandez M, Martin M, Rodriguez-Florido MA, Ruiz-Alzola J. disnei: A collaborative environment for medical images analysis and visualization. In AA Di-Gioia, S Delp, eds., Third International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'00), Lecture Notes in Computer Science 1935. Pittsburgh, PA, USA: Springer Verlag, 2000;814-823.
Westin CF, Lorigo LM, Faugeras OD, Grimson WEL, Dawson S, Norbash A, Kikinis R. Segmentation by adaptive geodesic active contours. In AM DiGioia, S Delp, eds., Proceedings of MICCAI 2000, Third International Conference on Medical Image Computing and Computer-Assisted Intervention. Pittsburgh, 2000;266-275.
Martin-Fernandez M, Alberola-Lopez C, Guerrero D, Ruiz-Alzola J. A coding technique with progressive reconstruction based on vq and entropy coding applied to medical images. In E Kramer, ed., Applications of Digital Image Processing XXIII, Proceedings of the SPIE 4115. San Diego, CA, USA: SPIE Press, 2000;171-181.
Martin-Fernandez M, Rodriguez E, Tejada D, Alberola-Lopez C, Ruiz-Alzola J. Energy functions for the segmentation of ultrasound volume data using active rays. In Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP'00). Istanbul, Turkey, 2000;2274-2277.
Westin CF, Richolt J, Moharir V, Kikinis R. Affine adaptive filtering of CT data. Medical Image Analysis 2000;4(2):161-172.
Grimson WEL, Leventon M, Lorigo LM, Kapur T, Faugeras OD, Kikinis R, Keriven R, Nabavi A, Westin CF. Image guided surgery. In Fourth International Workshop on Algorithmic Foundations of Robotics (WAFR). Hanover, NH, USA, 2000;443-450. Invited Paper.
Lorigo LM, Faugeras OD, Grimson WEL, Keriven R, Kikinis R, Westin CF. Co-dimension 2 geodesic active contours. In Proceedings of IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'02). South Carolina, USA, 2000;1444-1451.
Bouix S, Dimitrov P, Siddiqi K. Physics-based skeletons. In Vision Interface. Montreal, Canada, 2000;23-30.
Bouix S, Siddiqi K. Divergence-based medial surfaces. In ECCV, volume 1842 of Lecture Notes in Computer Science. Dublin, Ireland: Springer, 2000;603-618.
Mulkern RV, Gudbjartsson H, Westin CF, Zengigonul HP, Gartner W, GGuttmann CR, Robertson R, Kyriakos W, Schwartz R, Holtzman D, Jolesz FA, Maier SE. Multi-component apparent diffusion coefficients in human brain. NMR Biomedicine 1999;12:51-62.
Martin M, Martin-Fernandez M, Alberola-Lopez C, Ruiz-Alzola J. A novel error criterion for multi-resolution volume data compression. In Proceedings of the IEEE First Joint Conference of the Biomedical Engineering Society and the Engineering in Medicine and Biology Society (BMES/EMBS'99). Atlanta, GA, USA, 1999;1159.
Westin CF, Maier SE, Khidhir B, Everett P, Jolesz FA, Kikinis R. Image processing for diffusion tensor magnetic resonance imaging. In Medical Image Computing and Computer-Assisted Intervention, Lecture Notes in Computer Science. 1999;441-452.
Warfield SK, Westin CF, Guttmann CRG, Albert M, Jolesz FA, Kikinis R. Fractional segmentation of white matter. In Proceedings of MICCAI'99, Second International Conference on Medical Image Computing and Computer-Assisted Intervention, 1999, Lecture Notes in Computer Science. 1999;62-71.
Lorigo LM, Faugeras OD, Grimson WEL, Keriven R, Kikinis R, Westin CF. Co-dimension 2 geodesic active contours for mra segmentation. In Int'l Conf. Information Processing in Medical Imaging (IPMI'99). Visegr\'ad, Hungary, 1999;126-133. Best Paper Award.
Siddiqi K, Bouix S, Tannenbaum A, Zucker SW. The hamilton-jacobi skeleton. In ICCV. Corfu, Greece, 1999;828-834.
Gauch JM, Gauch S, Bouix S, Zhu X. Real time video scene detection and classification. Information processing and Management 1999;35(3):381-400.
Peled S, Gudbjartsson H, Westin CF, Kikinis R, Jolesz FA. Magnetic resonance imaging shows orientation and asymmetry of white matter tracts. Brain Research 1998;780(1):27-33.
Westin CF, Warfield S, Bhalerao A, Mui L, Richolt J, Kikinis R. Tensor controlled local structure enhancement of CT images for bone segmentation. In Medical Image Computing and Computer-Assisted Intervention (MICCAI'98), number ISSN 0302-9743 in Lecture Notes in Computer Science 1496. Springer Verlag, 1998;1205-1212.
Kikinis R, Warfield SK, Westin CF. High performance computing in medical image analysis at the surgical planning laboratory. In High Performance Computing Asia'98. Singapore, 1998;290-297.
Kettenbach J, Schreyer AG, Okuda S, Sweeney MD, Eisenberg S, Westin CF, Jacobson F, Kikinis R, KenKnight BH, Jolesz FA. 3D modelling of the chest in patients with implanted cardiac defibrillator for further bioelectrical simulation. In Proceedings of Computer Assisted Radiology. Tokyom Japan: Elsevier BV, 1998;194-198.
Bouix S. VISION: Segmentation, Indexing and Retrieval of Digital Videos. Master's thesis, EECS department, University of Kansas, Lawrence, KS, USA, 1998.
Hornero R, Martin-Fernandez M, Alonso A, Izquierdo A, Lopez M. A dsp implementation of wavelet transform to detect epileptiform activity in the eeg. In Proceedings of the Eighth Annual International Conference on Signal Processing Applications and Technology (ICAPAT'97). San Diego, CA, USA, 1997;692-696.
Sato Y, Westin CF, Bhalerao A, Nakajima S, Shiraga N, Yoshida S, Kikinis R. Tissue classification based on 3D local intensity structures for volume rendering. In Proc. JAMIT Frontier '97. Suita, Japan, 1997;167-172.
Westin CF, Bhalerao A, Knutsson H, Kikinis R. Using local 3D structure for segmentation of bone from computer tomography images. In IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR '97). Puerto Rico, 1997;794-800.
Westin CF, Peled S, Gudbjartsson H, Kikinis R, Jolesz FA. Geometrical diffusion measures for MRI from tensor basis analysis. In ISMRM '97. Vancouver Canada, 1997;1742.
Bhalerao A, Westin CF, Kikinis R. Unwrapping phase in 3D MR phase contrast angiograms. In 1st Joint Conference Computer Vision, Virtual Reality and Robotics in Medicine and Medical Robotics and Computer-Assisted Surgery, CVRMED/MRCAS '97, Lecture Notes in Computer Science. Grenoble France: Springer-Verlag, 1997;193-202.
Karlholm J, Westelius CJ, Westin CF, Knutsson H. Object tracking based on the orientation tensor concept. In G Borgefors, ed., Theory and Applications of Image Analysis II. World Scientific, 1996;Selected papers from the 9th Scandinavian Conference on Image Analysis.
Westin CF, Westelius CJ, Knutsson H, Granlund GH. Attention control in robot vision. In IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR '96). San Francisco, 1996;726-733.
Karlholm J, Westelius CJ, Westin CF, Knutsson H. Tracking based on the orientation tensor concept. In Proceeding of 9th SCIA. Uppsala, Sweden, 1995;163-171.
Westelius CJ, Knutsson H, Wiklund J, Westin CF. Phase-based disparity estimation. In JCH Christensen, ed., Vision as Process. Springer, 1995;Basic Research Series.
Westin CF, Knutsson H. Line extraction using tensors. In JCH Christensen, ed., Vision as Process. Springer, 1995;Basic Research Series.
Westin CF, Granlund G, Knutsson H. Advanced image processing: Introduction and background. In HC JL Crowley, ed., Vision as Process. Springer, 1995;Basic Research Series.
Karlholm J, Westelius CJ, Westin CF, Knutsson H. Object tracking based on the orientation tensor concept. In Proceedings of the 9th Scandinavian Conference on Image Analysis. Uppsala, Sweden: SCIA, 1995;.
Westelius CJ, Wiklund J, Westin CF. Prototyping, visualization and simulation using the application visualization system. In HI Christensen, J Crowley, eds., Experimental Environments for Computer Vision and Image Processing, volume 11 of Series on Machine Perception and Artificial Intelligence. World Scientific Publisher, 1994;33-62. ISBN 981-02-1510-X.
Karlholm J, Westelius CJ, Westin CF, Knutsson H. Object tracking based on the orientation tensor concept. Report LiTH-ISY-R-1658, Computer Vision Laboratory, SE-581 83 Linköping, Sweden, 1994.
Westin CF. A Tensor Framework for Multidimensional Signal Processing. Ph.D. thesis, Linköping University, Sweden, S-581 83 Linköping, Sweden, 1994. Dissertation No 348, ISBN 91-7871-421-4.
Knutsson H, Westin CF, Granlund GH. Local multiscale frequency and bandwidth estimation. In IEEE International Conference on Image Processing (ICIP'94). Austin, Texas, 1994;36-40.
Westin CF, Knutsson H. Processing incomplete and uncertain data using subspace methods. In Proceedings of 12th International Conference on Pattern Recognition. Jerusalem,Israel: IAPR, 1994;171-173.
Westin CF, Westelius CJ, Wiklund J, Knutsson H, Granlund G. ESPRIT basic research action 7108, Vision as Process, DR.B.2: Integration of multi-level control loops and FOA. Report, Computer Vision Laboratory, SE-581 83 Linköping, Sweden, 1994.
Westin CF, Knutsson H. Estimation of motion vector fields using tensor field filtering. In Proceedings of IEEE International Conference on Image Processing (ICIP'94). Austin, Texas, 1994;237-242.
Westin CF, Nordberg K, Knutsson H. On the equivalence of normalized convolution and normalized differential convolution. In Proceedings of IEEE International Conference on Acoustics, Speech, & Signal Processing (ICASSP'94). Adelaide, Australia, 1994;457-460.
Westin CF, Knutsson H. Processing incomplete and uncertain data using subspace methods. In Proceedings of 12th International Conference on Pattern Recognition (ICPR'94). Jerusalem, Israel, 1994;171-173.
Westin CF, Westelius CJ. ESPRIT basic research action 7108, Vision as Process, DR.B.1: Integration of low-level FOA & control mechanisms. Report, Computer Vision Laboratory, SE-581 83 Linköping, Sweden, 1993.
Wiklund J, Westin CF, Westelius CJ. AVS, application visualization system, software evaluation report. Report LiTH-ISY-R-1469, Computer Vision Laboratory, SE-581 83 Linköping, Sweden, 1993.
Knutsson H, Westin CF. Normalized and differential convolution: Methods for interpolation and filtering of incomplete and uncertain data. In Proceedings of Computer Vision and Pattern Recognition (CVPR'93). New York City, USA, 1993;515-523.
Knutsson H, Westin CF. Normalized convolution: A technique for filtering incomplete and uncertain data. In Proceedings of the 8th Scandinavian Conference on Image Analysis. SCIA, Tromsö, Norway: NOBIM, Norwegian Society for Image Processing and Pattern Recognition, 1993;Report LiTH-ISY-I-1528.
Westin CF. ESPRIT basic research action 3038, Vision as Process, DR.A.2.1: Model support and local FOA control. Report, Computer Vision Laboratory, SE-581 83 Linköping, Sweden, 1992.
Westin CF, Knutsson H. Extraction of local symmetries using tensor field filtering. In Proceedings of 2nd Singapore International Conference on Image Processing. IEEE Singapore Section, 1992;371-375. ISBN 91-7870-815-X, 1991.
Westin CF, Knutsson H. The Möbius strip parameterization for line extraction. In G Sandini, ed., In Proceedings of Second European Conference on Computer Vision ECCV'92. Santa Margherita Ligure, Italy: Springer-Verlag, 1992;33-38. LNCS-Series Vol. 588.
Westin CF, Knutsson H. Line segmentation by clustering in Möbius-Hough space. Report LiTH-ISY-I-1221, Computer Vision Laboratory, Linköping University, Sweden, 1991.
Westin CF. Feature Extraction Based on a Tensor Image Description. Licentiate thesis in computer vision, Linköping University, Dept. EE, Linköping, Sweden, 1991. Thesis No. 288, ISBN 91-7870-815-X.
Westin CF, Knutsson H. The Möbius strip parameterization for line segmentation. In Proceedings of the SSAB Symposium on Image Analysis. Stockholm: SSAB, 1991;.
Westin CF, Knutsson H. ESPRI basic research action 3038, Vision as Process, DR.A.1.2: Definition of feature generating procedures. Report, Computer Vision Laboratory, SE-581 83 Linköping, Sweden, 1991.
Westin CF, Knutsson H. A parameter mapping for line segmentation. Report LiTH-ISY-I-1151, Computer Vision Laboratory, Linköping University, Sweden, 1990.
Westelius CJ, Westin CF. A colour representation for scale-spaces. In Proceedings of 6th SCIA. Oulu, Finland, 1989;890-893.
Westin CF, Westelius CJ. Brain chaos. A feature or a bug? Report LiTH-ISY-I-0990, Computer Vision Laboratory, Linköping University, Sweden, 1989.
Westin CF. A Colour Model for Hierarchical Image Processing. Masters thesis in computer vision, Linköping University, Dept. EE, Linköping, Sweden, 1988. Thesis No. 288, ISBN 91-7870-815-X.
