Workshop Wiki DMRI09 Literature

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Literature

These are publications relevant to some of the talks. This page is being continuously updated, so please check back for material for other talks.

Daniel Alexander

  • Alexander, D. C. and Barker, G. J., Optimal imaging parameters for fibre-orientation estimation in diffusion MRI,NeuroImage,2005, 27, 357-367.
  • Alexander, D. C. Multiple fibre reconstructions for diffusion MRI , Annals of the New York Academy of Sciences, 2005, 1046, 113-133
  • Alexander, D. C. and Barker, G. J. and Arridge, S. R. , Detection and modeling of non-Gaussian apparent diffusion coefficient profiles in human brain data, Magnetic Resonance in Medicine, 2002, 48, 331--340
  • Tuch, D. S. and Reese, T. G. and Wiegell, M. R. and Wedeen, V. J, Diffusion MRI of complex neural architecture, Neuron, 2003, 40, 885--895
  • Tuch, D. S. and Reese, T. G. and Wiegell, M. R. and Makris, N and Belliveau, J. W. and Wedeen, V. J., High angular resolution diffusion imaging reveals intravoxelwhite matter fiber heterogeneity, Magnetic Resonance in Medicine, 2002, 48, 577--582
  • Tournier, J-D. and Calamante, F. and Gadian, D. G. and Connelly, A., Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution, NeuroImage? , 2004, 23, 1176--1185
  • Tournier, J-D. and Calamante, F. and Connelly, A., Robust determination of the fibre orientation distribution in diffusion MRI: Non-negativity constrained super-resolved spherical deconvolution,NeuroImage,2007, 35, 1459--1472
  • Seunarine, K. K. and Cook, P. A. and Hall, M. G. and Embleton, K. and Parker, G. J. M. and Alexander, D. C., Exploiting peak anisotropy for tracking through complex structures., Proc. ICCV workshop on MMBIA, 2007.

Rachid Deriche

Baba Vemuri

Ragini Verma

  • Parmeshwar Khurd, Ragini Verma, Christos Davatzikos: Kernel-Based Manifold Learning for Statistical Analysis of Diffusion Tensor Images. IPMI 2007: 581-593.
  • Verma, R. Khurd, P. Davatzikos, C. On Analyzing Diffusion Tensor Images by Identifying Manifold Structure Using Isomaps IEEE Transactions on Medical Imaging. Volume: 26 (6), June 2007, 772-778.
  • Ragini Verma, Parmeshwar Khurd, James Loughead, Raquel Gur, Ruben Gur, Christos Davatzikos: Manifold based morphometry applied to schizophrenia, ISBI, 2008.
  • Jinzhong Yang, Dinggang Shen, Christos Davatzikos, Ragini Verma:Diffusion Tensor Image Registration Using Tensor Geometry and Orientation Features,MICCAI, 2008
  • Peng Wang , Ragini Verma:On Classifying Disease-induced Patterns in the Brain using Diffusion Tensor Images, MICCAI, 2008

Carl-Fredrik Westin

  • Friman O, Farneback G, Westin CF. A Bayesian approach for stochastic white matter tractography. TMI 2006;25(8):965-978.
  • Brun A, Knutsson H, Park HJ, Shenton ME, Westin CF. Clustering fiber tracts using normalized cuts. In Seventh International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'04), Lecture Notes in Computer Science. Rennes - Saint Malo, France, 2004;368-375.

Evren Özarslan

  • Shemesh, N., Özarslan, E., Bar-Shir A., Basser, P.J., and Cohen, Y. (2009) Observation of restricted diffusion in the presence of a free diffusion compartment: Single- and double-PFG experiments. J Magn Reson 200:214-225.
  • Özarslan, E. (2009) Compartment shape anisotropy (CSA) revealed by double pulsed field gradient MR. J Magn Reson 199:56-67.
  • Shemesh, N., Özarslan, E., Basser, P.J., and Cohen, Y. (2009) Measuring small compartmental dimensions with low-q angular double-PGSE NMR: The effect of experimental parameters on signal decay. J Magn Reson 198:15-23.
  • Özarslan, E., Shemesh, N., and Basser, P.J. (2009) A general framework to quantify the effect of restricted diffusion on the NMR signal with applications to double pulsed field gradient NMR experiments. J Chem Phys 130:104702 (1-9).
  • Özarslan, E., Koay, C.G., and Basser, P.J. (2009) Remarks on q-space MR propagator in partially restricted, axially-symmetric, and isotropic environments. Magn Reson Imaging 27:834-844.
  • Avram, L., Özarslan, E., Assaf, Y., Bar-Shir, A., Cohen, Y., and Basser, P.J. (2008) Three-dimensional water diffusion in impermeable cylindrical tubes: theory versus experiments. NMR Biomed 21:888–898.
  • Özarslan, E. and Basser, P.J. (2008) Microscopic anisotropy revealed by NMR double pulsed field gradient experiments with arbitrary timing parameters. J Chem Phys 128:154511(1-11).
  • Özarslan, E., Nevo, U., and Basser, P.J. (2008) Anisotropy induced by macroscopic boundaries: Surface normal mapping using diffusion-weighted imaging. Biophys J 94(7):2809-2818.
  • Özarslan, E. and Basser, P.J. (2007) MR diffusion-"diffraction" phenomenon in multi-pulse-field-gradient experiments. J Magn Reson 188:285-294.
  • Özarslan, E., Basser, P.J., Shepherd, T.M., Thelwall, P.E., Vemuri, B.C., and Blackband, S.J. (2006) Observation of anomalous diffusion in excised tissue by characterizing the diffusion-time dependence of the MR signal. J Magn Reson 183:315-323.

Additional Publications

HARDI publications from LONI, UCLA, Contact: Paul Thomson
















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Parent: DMRI09/WebLeftBar Revision: r36 - 14 Sep 2009 - 23:27:03 - CarlFredrikWestin

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