Workshop Wiki DMRI07 Software

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Diffusion Tutorial

Examples of diffusion analysis software available for download:

1. 3D Slicer:
http://slicer.org: Slicer2 diffusion module: Laboratory of Mathematics in Imaging, BWH Harvard Medical School
http://slicer.org: Slicer3 platform collaborative development within NA-MIC
NA-MIC wiki
Reads dicom data. For diffusion data, the nrrd data from at is preferred.

2. MRIStudio: Susumu Mori's lab
https://www.mristudio.org/ Reads dicom data. Works on data from most scanner vendors.

3. MedINRIA; INRIA, Xavier Pennec and Pierre Fillard
http://www-sop.inria.fr/asclepios/software/MedINRIA/

4. FIberTracking: UNC Guido Gerig et al.
http://www.ia.unc.edu/dev/download/fibertracking/index.htm

5. FiberViewer: UNC Guido Gerig et al.
http://www.ia.unc.edu/dev/download/fiberviewer/index.htm

6. Volume-one:
http://www.volume-one.org/
Reads dicom data.

7. Camino: Danny Alexander
http://en.wikipedia.org/wiki/Camino_(diffusion_MRI_toolkit)

8. FSL: FMRIB's Diffusion Toolbox
http://www.fmrib.ox.ac.uk/fsl/fdt/index.html

9. CATNAP: Jerry Prince's lab
http://www.nbirn.net/tools/catnap/index.shtm
Reads dicom data. Prefers Phillips data.



Diffusion data for download

Diffusion data from Siemens scanner, 30 diffusion directions
Download data (88.8 Mb)

Diffusion data from Philips scanner, 30 diffusion directions
Download data (44.5 Mb)

-- CarlFredrikWestin - 28 Oct 2007

 

Revision: r2 - 28 Oct 2007 - 22:15:50 - CarlFredrikWestin


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